Information for 4-CCGGCACAGTCTGCGC (Motif 10)

A T G C A G T C A C T G A T C G G T A C C T G A T A G C G T C A A C T G A C G T A T G C A C G T A C T G A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G A G T C T C G A A T C G T C G A A G T C A C G T A C T G A G C T A C T G A T G C G T A C C T A G A T C G
p-value:1e-11
log p-value:-2.583e+01
Information Content per bp:1.791
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.5 +/- 20.0bp
Average Position of motif in Background50.5 +/- 42.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCGGCACAGTCTGCGC--
--AGNACAGNCTGTTCTN
 A T G C A G T C A C T G A T C G G T A C C T G A T A G C G T C A A C T G A C G T A T G C A C G T A C T G A G T C A C T G A G T C A C G T A C G T
A C G T A C G T C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

NRF1/MA0506.1/Jaspar

Match Rank:2
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CCGGCACAGTCTGCGC-
------GCGCCTGCGCA
 A T G C A G T C A C T G A T C G G T A C C T G A T A G C G T C A A C T G A C G T A T G C A C G T A C T G A G T C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCGGCACAGTCTGCGC--
--AGNACANNNTGTNCTN
 A T G C A G T C A C T G A T C G G T A C C T G A T A G C G T C A A C T G A C G T A T G C A C G T A C T G A G T C A C T G A G T C A C G T A C G T
A C G T A C G T C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCGGCACAGTCTGCGC
-VAGRACAKNCTGTBC
 A T G C A G T C A C T G A T C G G T A C C T G A T A G C G T C A A C T G A C G T A T G C A C G T A C T G A G T C A C T G A G T C
A C G T T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCGGCACAGTCTGCGC
CCAGGAACAG-------
 A C G T A T G C A G T C A C T G A T C G G T A C C T G A T A G C G T C A A C T G A C G T A T G C A C G T A C T G A G T C A C T G A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCGGCACAGTCTGCGC
-VAGRACAKWCTGTYC
 A T G C A G T C A C T G A T C G G T A C C T G A T A G C G T C A A C T G A C G T A T G C A C G T A C T G A G T C A C T G A G T C
A C G T T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

HINFP/MA0131.2/Jaspar

Match Rank:7
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CCGGCACAGTCTGCGC
----CAACGTCCGCGG
 A T G C A G T C A C T G A T C G G T A C C T G A T A G C G T C A A C T G A C G T A T G C A C G T A C T G A G T C A C T G A G T C
A C G T A C G T A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CCGGCACAGTCTGCGC
------GAGSCCGAGC
 A T G C A G T C A C T G A T C G G T A C C T G A T A G C G T C A A C T G A C G T A T G C A C G T A C T G A G T C A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CCGGCACAGTCTGCGC
------CTGTCTGG--
 A T G C A G T C A C T G A T C G G T A C C T G A T A G C G T C A A C T G A C G T A T G C A C G T A C T G A G T C A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.49
Offset:4
Orientation:forward strand
Alignment:CCGGCACAGTCTGCGC
----VBSYGTCTGG--
 A T G C A G T C A C T G A T C G G T A C C T G A T A G C G T C A A C T G A C G T A T G C A C G T A C T G A G T C A C T G A G T C
A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T