Information for 5-GGGARATGTAGTT (Motif 3)

A C T G A C T G C T A G C G T A C T A G C G T A A C G T A C T G A C G T C G T A A T C G A C G T A G C T
Reverse Opposite:
T C G A C G T A A T G C G A C T G T C A G T A C G T C A G C A T A G T C A C G T A G T C A G T C A G T C
p-value:1e-20
log p-value:-4.705e+01
Information Content per bp:1.784
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.89%
Number of Background Sequences with motif193.9
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets44.6 +/- 31.4bp
Average Position of motif in Background46.9 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:GGGARATGTAGTT
GGGAATTGTAGT-
 A C T G A C T G C T A G C G T A C T A G C G T A A C G T A C T G A C G T C G T A A T C G A C G T A G C T
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:2
Score:0.85
Offset:-7
Orientation:reverse strand
Alignment:-------GGGARATGTAGTT
GCMTBCTGGGAGTTGTAGTY
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T A G C G T A C T A G C G T A A C G T A C T G A C G T C G T A A T C G A C G T A G C T
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:3
Score:0.83
Offset:-7
Orientation:reverse strand
Alignment:-------GGGARATGTAGTT
GCATTCTGGGAATTGTAGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T A G C G T A C T A G C G T A A C G T A C T G A C G T C G T A A T C G A C G T A G C T
T C A G T A G C G T C A A G C T A C G T A G T C A G C T A C T G A C T G C T A G C G T A C T G A C G A T A G C T A C T G A C G T C T G A A C T G A C G T A G C T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGGARATGTAGTT-
----NNTGTGGTTT
 A C T G A C T G C T A G C G T A C T A G C G T A A C G T A C T G A C G T C G T A A T C G A C G T A G C T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T

MZF1/MA0056.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGGARATGTAGTT
TGGGGA---------
 A C G T A C G T A C T G A C T G C T A G C G T A C T A G C G T A A C G T A C T G A C G T C G T A A T C G A C G T A G C T
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GGGARATGTAGTT--
-----CTGTGGTTTN
 A C T G A C T G C T A G C G T A C T A G C G T A A C G T A C T G A C G T C G T A A T C G A C G T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GGGARATGTAGTT-
----GCTGTGGTTT
 A C T G A C T G C T A G C G T A C T A G C G T A A C G T A C T G A C G T C G T A A T C G A C G T A G C T A C G T
A C G T A C G T A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GGGARATGTAGTT--
---NNHTGTGGTTWN
 A C T G A C T G C T A G C G T A C T A G C G T A A C G T A C T G A C G T C G T A A T C G A C G T A G C T A C G T A C G T
A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

PB0131.1_Gmeb1_2/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGGARATGTAGTT--
TGGGCGACGTCGTTAA
 A C G T A C T G A C T G C T A G C G T A C T A G C G T A A C G T A C T G A C G T C G T A A T C G A C G T A G C T A C G T A C G T
C A G T C A T G T C A G A C T G G T A C T C A G G C T A T A G C A C T G C A G T A G T C C A T G G A C T A G C T G T C A G C T A

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GGGARATGTAGTT
GGCGGGAARN------
 A C G T A C G T A C G T A C T G A C T G C T A G C G T A C T A G C G T A A C G T A C T G A C G T C G T A A T C G A C G T A G C T
T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T