Information for 22-CCAGTCTAGGTTT (Motif 38)

A G T C G T A C C G T A A C T G A C G T A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T
Reverse Opposite:
G T C A C G T A C G T A A G T C G T A C A C G T C G T A A C T G C G T A A G T C C G A T A C T G A C T G
p-value:1e-6
log p-value:-1.579e+01
Information Content per bp:1.934
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.0 +/- 32.4bp
Average Position of motif in Background68.0 +/- 44.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

IRF8/MA0652.1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCAGTCTAGGTTT---
--AGTTTCGGTTTCGN
 A G T C G T A C C G T A A C T G A C G T A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T A C G A C G T G C A T A G C T A G T C C T A G A T C G C G A T C G A T A C G T G A T C C T A G C T G A

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCAGTCTAGGTTT-
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A G T C G T A C C G T A A C T G A C G T A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCAGTCTAGGTTT
-CTGTCTGG----
 A G T C G T A C C G T A A C T G A C G T A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

IRF9/MA0653.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCAGTCTAGGTTT----
--AGTTTCGGTTTCGTT
 A G T C G T A C C G T A A C T G A C G T A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A A T C G C G A T C G A T A C G T G A T C C T A G A T C G C A G T C G A T A C G T G A T C C T A G C G A T C G A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCAGTCTAGGTTT
-TWGTCTGV----
 A G T C G T A C C G T A A C T G A C G T A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCAGTCTAGGTTT-
AGTATTCTCGGTTGC
 A C G T A G T C G T A C C G T A A C T G A C G T A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCAGTCTAGGTTT
VBSYGTCTGG----
 A C G T A G T C G T A C C G T A A C T G A C G T A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCAGTCTAGGTTT-
ACCACTCTCGGTCAC
 A C G T A G T C G T A C C G T A A C T G A C G T A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCAGTCTAGGTTT-
--AGTTTCAGTTTC
 A G T C G T A C C G T A A C T G A C G T A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A A T C G A G C T A G C T A C G T T A G C C T G A T A C G C G A T A C G T G A C T A G T C

PB0035.1_Irf5_1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCAGTCTAGGTTT--
NTGGTTTCGGTTNNN
 A G T C G T A C C G T A A C T G A C G T A G T C A C G T C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A G C T G A C T C T A G A C T G A C G T G C A T A G C T A G T C C T A G C T A G G A C T G C A T G A C T G C T A C G A T