Information for 17-GCACGCAGAA (Motif 37)

A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A C G T A C T G A G T C A C T G A C G T A C T G A G T C
p-value:1e-6
log p-value:-1.579e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.2 +/- 15.5bp
Average Position of motif in Background53.9 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GCACGCAGAA
TBGCACGCAA--
 A C G T A C G T A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCACGCAGAA
-CACGCA---
 A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A
A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCACGCAGAA
BGCACGTA---
 A C G T A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCACGCAGAA
GCACGTNC--
 A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCACGCAGAA
GCACGTAY--
 A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCACGCAGAA
GCACGTACCC
 A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCACGCAGAA--
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Hes1/MA1099.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCACGCAGAA
GGCACGCGTC-
 A C G T A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCACGCAGAA-----
CCACACAGCAGGAGA
 A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCACGCAGAA-----
CCACACAGCAGGAGA
 A C T G A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A