Information for 2-GGTHGCCATGGCGACH (Motif 2)

A T C G A C T G C G A T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G A G T C C T A G C G T A A T G C G C A T
Reverse Opposite:
C G T A T A C G A C G T A G T C C T A G A G T C A G T C C G T A C G A T C T A G C T A G A G T C C G T A C G T A G T A C A T G C
p-value:1e-20
log p-value:-4.699e+01
Information Content per bp:1.726
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.21%
Number of Background Sequences with motif20.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets52.8 +/- 23.8bp
Average Position of motif in Background45.3 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:1
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-GGTHGCCATGGCGACH
CGGTTGCCATGGCAAC-
 A C G T A T C G A C T G C G A T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G A G T C C T A G C G T A A T G C G C A T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:2
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:GGTHGCCATGGCGACH
KGTTGCCATGGCAAC-
 A T C G A C T G C G A T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G A G T C C T A G C G T A A T G C G C A T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GGTHGCCATGGCGACH
NGTTGCCATGGCAA--
 A T C G A C T G C G A T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G A G T C C T A G C G T A A T G C G C A T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T

RFX4/MA0799.1/Jaspar

Match Rank:4
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:GGTHGCCATGGCGACH
CGTTGCCATGGCAACN
 A T C G A C T G C G A T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G A G T C C T A G C G T A A T G C G C A T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:GGTHGCCATGGCGACH
-GTTGCCATGGNAAC-
 A T C G A C T G C G A T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G A G T C C T A G C G T A A T G C G C A T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C A C G T

RFX3/MA0798.1/Jaspar

Match Rank:6
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GGTHGCCATGGCGACH
CGTTGCCATGGCAACN
 A T C G A C T G C G A T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G A G T C C T A G C G T A A T G C G C A T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GGTHGCCATGGCGACH
CGTTGCCATGGCAACG
 A T C G A C T G C G A T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G A G T C C T A G C G T A A T G C G C A T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GGTHGCCATGGCGACH
GGTTGCCATGGCAA--
 A T C G A C T G C G A T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G A G T C C T A G C G T A A T G C G C A T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T

RFX5/MA0510.2/Jaspar

Match Rank:9
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGTHGCCATGGCGACH
CGTTGCCATGGCAACG
 A T C G A C T G C G A T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G A G T C C T A G C G T A A T G C G C A T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GGTHGCCATGGCGACH-
-----SCCTAGCAACAG
 A T C G A C T G C G A T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G A G T C C T A G C G T A A T G C G C A T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G