Information for 24-CCAGCCATTT (Motif 43)

A G T C A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G A C T G
p-value:1e-4
log p-value:-1.109e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.8 +/- 29.8bp
Average Position of motif in Background16.1 +/- 13.7bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCAGCCATTT--
GCNGCCATCTTG
 A G T C A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCAGCCATTT
GTCCGCCATTA
 A C G T A G T C A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCCATTT--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCAGCCATTT--
GCCGCCATCTTG
 A G T C A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCAGCCATTT--
--GGCCATTAAC
 A G T C A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCAGCCATTT
BCAGACWA--
 A G T C A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCCATTT--
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCAGCCATTT
-CAGCC----
 A G T C A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCAGCCATTT-
ACTAGCCAATCA
 A C G T A G T C A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCAGCCATTT
CCAGACAG--
 A G T C A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T