Information for 3-KYTTGGCAGS (Motif 4)

A C G T A G C T A C G T A C G T C T A G A C T G T G A C C G T A C A T G A T C G
Reverse Opposite:
T A G C G T A C C G A T A C T G A G T C G A T C C G T A C G T A T C G A T G C A
p-value:1e-18
log p-value:-4.223e+01
Information Content per bp:1.695
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif7.64%
Number of Background Sequences with motif879.3
Percentage of Background Sequences with motif1.82%
Average Position of motif in Targets47.8 +/- 23.3bp
Average Position of motif in Background48.3 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:KYTTGGCAGS
NNTTGGCANN
 A C G T A G C T A C G T A C G T C T A G A C T G T G A C C G T A C A T G A T C G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.87
Offset:2
Orientation:forward strand
Alignment:KYTTGGCAGS
--TTGGCA--
 A C G T A G C T A C G T A C G T C T A G A C T G T G A C C G T A C A T G A T C G
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:KYTTGGCAGS
-NTTGGCANN
 A C G T A G C T A C G T A C G T C T A G A C T G T G A C C G T A C A T G A T C G
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:KYTTGGCAGS
-CTTGGCAA-
 A C G T A G C T A C G T A C G T C T A G A C T G T G A C C G T A C A T G A T C G
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:KYTTGGCAGS
GGTTGGCAT-
 A C G T A G C T A C G T A C G T C T A G A C T G T G A C C G T A C A T G A T C G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.70
Offset:-8
Orientation:forward strand
Alignment:--------KYTTGGCAGS
NNTGTTTATTTTGGCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T C T A G A C T G T G A C C G T A C A T G A T C G
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----KYTTGGCAGS--
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T C T A G A C T G T G A C C G T A C A T G A T C G A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.68
Offset:2
Orientation:forward strand
Alignment:KYTTGGCAGS
--TTGACAGC
 A C G T A G C T A C G T A C G T C T A G A C T G T G A C C G T A C A T G A T C G
A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:KYTTGGCAGS
NGTGGGCAT-
 A C G T A G C T A C G T A C G T C T A G A C T G T G A C C G T A C A T G A T C G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:forward strand
Alignment:KYTTGGCAGS
--TTGACAGG
 A C G T A G C T A C G T A C G T C T A G A C T G T G A C C G T A C A T G A T C G
A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G