Information for 10-CCTCTACAGA (Motif 33)

A G T C G A T C A C G T A T G C A C G T C G T A A T G C C G T A A T C G G T C A
Reverse Opposite:
A C G T T A G C A C G T A T C G A C G T C G T A A T C G C G T A C A T G C T A G
p-value:1e-7
log p-value:-1.721e+01
Information Content per bp:1.823
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif57.2
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets67.2 +/- 22.3bp
Average Position of motif in Background47.7 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCTCTACAGA
CGTCTAGACA
 A G T C G A T C A C G T A T G C A C G T C G T A A T G C C G T A A T C G G T C A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

PH0158.1_Rhox11_2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCTCTACAGA-----
TCNCTTTACAGCGNNNT
 A C G T A C G T A G T C G A T C A C G T A T G C A C G T C G T A A T G C C G T A A T C G G T C A A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

Rhox11/MA0629.1/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCTCTACAGA-----
TCNNTTTACAGCGNNNT
 A C G T A C G T A G T C G A T C A C G T A T G C A C G T C G T A A T G C C G T A A T C G G T C A A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCTCTACAGA-----
TCNNTTTACAGCGNNNT
 A C G T A C G T A G T C G A T C A C G T A T G C A C G T C G T A A T G C C G T A A T C G G T C A A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTACAGA
NSCACTYVAV-
 A C G T A G T C G A T C A C G T A T G C A C G T C G T A A T G C C G T A A T C G G T C A
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

Stat6/MA0520.1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCTCTACAGA---
CATTTCCTGAGAAAT
 A C G T A C G T A G T C G A T C A C G T A T G C A C G T C G T A A T G C C G T A A T C G G T C A A C G T A C G T A C G T
A T G C C G T A A G C T A C G T C G A T G T A C G A T C C G A T T A C G C T G A C A T G C G T A C T G A T G C A G A C T

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCTCTACAGA-
CCTTTTATAGNC
 A C G T A G T C G A T C A C G T A T G C A C G T C G T A A T G C C G T A A T C G G T C A A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCTCTACAGA-
WWATRTAAACAN
 A C G T A G T C G A T C A C G T A T G C A C G T C G T A A T G C C G T A A T C G G T C A A C G T
G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.52
Offset:-8
Orientation:forward strand
Alignment:--------CCTCTACAGA--
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A T C A C G T A T G C A C G T C G T A A T G C C G T A A T C G G T C A A C G T A C G T
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------CCTCTACAGA
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A T C A C G T A T G C A C G T C G T A A T G C C G T A A T C G G T C A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T