Information for 12-ATCTGCAKGAWGC (Motif 22)

C G T A A C G T A G T C A C G T A C T G A G T C C G T A A C G T C T A G C G T A C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C C G A T A C G T A G T C G T C A A C G T A C T G G T A C C G T A C T A G C G T A A C G T
p-value:1e-9
log p-value:-2.220e+01
Information Content per bp:1.912
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.8 +/- 16.0bp
Average Position of motif in Background42.7 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU2F2/MA0507.1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ATCTGCAKGAWGC
TTCATTTGCATAT---
 A C G T A C G T A C G T C G T A A C G T A G T C A C G T A C T G A G T C C G T A A C G T C T A G C G T A C G T A A C T G A G T C
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATCTGCAKGAWGC
ATTTGCATAA---
 C G T A A C G T A G T C A C G T A C T G A G T C C G T A A C G T C T A G C G T A C G T A A C T G A G T C
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----ATCTGCAKGAWGC
TNTAATTTGCATANNN-
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T A C T G A G T C C G T A A C G T C T A G C G T A C G T A A C T G A G T C
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----ATCTGCAKGAWGC
TNTAATTTGCATACNA-
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T A C T G A G T C C G T A A C G T C T A G C G T A C G T A A C T G A G T C
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----ATCTGCAKGAWGC
TNTAATTTGCATACNA-
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C A C G T A C T G A G T C C G T A A C G T C T A G C G T A C G T A A C T G A G T C
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ATCTGCAKGAWGC
CTCATTTGCATW----
 A C G T A C G T A C G T C G T A A C G T A G T C A C G T A C T G A G T C C G T A A C G T C T A G C G T A C G T A A C T G A G T C
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATCTGCAKGAWGC--
WYATGCATWATGCAT
 C G T A A C G T A G T C A C G T A C T G A G T C C G T A A C G T C T A G C G T A C G T A A C T G A G T C A C G T A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ATCTGCAKGAWGC
BTVATTWGCATA----
 A C G T A C G T A C G T C G T A A C G T A G T C A C G T A C T G A G T C C G T A A C G T C T A G C G T A C G T A A C T G A G T C
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-ATCTGCAKGAWGC
AATTTGCATANT--
 A C G T C G T A A C G T A G T C A C G T A C T G A G T C C G T A A C G T C T A G C G T A C G T A A C T G A G T C
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:ATCTGCAKGAWGC
---ANCAGGATGT
 C G T A A C G T A G T C A C G T A C T G A G T C C G T A A C G T C T A G C G T A C G T A A C T G A G T C
A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T