Information for 13-CCAGCCAGGAGTGCAA (Motif 19)

T G A C G T A C G T C A C T A G A T G C A G T C C T G A A C T G A T C G C T G A A T C G C G A T A T C G G T A C C G T A T C G A
Reverse Opposite:
A G C T G A C T C A T G T A G C G C T A A T G C G A C T A T G C A G T C A G C T T C A G A T C G A G T C A C G T C A T G A C T G
p-value:1e-10
log p-value:-2.341e+01
Information Content per bp:1.660
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif52.7
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets46.2 +/- 25.3bp
Average Position of motif in Background46.0 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCCAGGAGTGCAA
CAAATCCAGACATCACA----
 A C G T A C G T A C G T A C G T A C G T T G A C G T A C G T C A C T A G A T G C A G T C C T G A A C T G A T C G C T G A A T C G C G A T A T C G G T A C C G T A T C G A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCAGCCAGGAGTGCAA
CCAGACAG--------
 T G A C G T A C G T C A C T A G A T G C A G T C C T G A A C T G A T C G C T G A A T C G C G A T A T C G G T A C C G T A T C G A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCAGCCAGGAGTGCAA
SCAGYCADGCATGAC-
 T G A C G T A C G T C A C T A G A T G C A G T C C T G A A C T G A T C G C T G A A T C G C G A T A T C G G T A C C G T A T C G A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCAGCCAGGAGTGCAA
CCAGACRSVB------
 T G A C G T A C G T C A C T A G A T G C A G T C C T G A A C T G A T C G C T G A A T C G C G A T A T C G G T A C C G T A T C G A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCAGCCAGGAGTGCAA
BCAGACWA--------
 T G A C G T A C G T C A C T A G A T G C A G T C C T G A A C T G A T C G C T G A A T C G C G A T A T C G G T A C C G T A T C G A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CCAGCCAGGAGTGCAA
----CCWGGAATGY--
 T G A C G T A C G T C A C T A G A T G C A G T C C T G A A C T G A T C G C T G A A T C G C G A T A T C G G T A C C G T A T C G A
A C G T A C G T A C G T A C G T A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCCAGGAGTGCAA
ATGCCAGACN---------
 A C G T A C G T A C G T T G A C G T A C G T C A C T A G A T G C A G T C C T G A A C T G A T C G C T G A A T C G C G A T A T C G G T A C C G T A T C G A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCCAGGAGTGCAA
TGCCCAGNHW---------
 A C G T A C G T A C G T T G A C G T A C G T C A C T A G A T G C A G T C C T G A A C T G A T C G C T G A A T C G C G A T A T C G G T A C C G T A T C G A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CCAGCCAGGAGTGCAA
GCAGCCAAGCGTGACN
 T G A C G T A C G T C A C T A G A T G C A G T C C T G A A C T G A T C G C T G A A T C G C G A T A T C G G T A C C G T A T C G A
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCCAGGAGTGCAA
CACAGN-----------
 A C G T T G A C G T A C G T C A C T A G A T G C A G T C C T G A A C T G A T C G C T G A A T C G C G A T A T C G G T A C C G T A T C G A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T