Information for 1-TTGGCHNNRDGCCAAN (Motif 1)

G A C T A C G T A C T G A C T G T G A C G C T A A T G C A G T C T C A G C G A T A C T G A G T C A G T C G T C A T C G A T C G A
Reverse Opposite:
A G C T A G C T C A G T A C T G A C T G T G A C G C T A A G T C C T A G T A C G C G A T A C T G A G T C A G T C G T C A C T G A
p-value:1e-368
log p-value:-8.484e+02
Information Content per bp:1.598
Number of Target Sequences with motif284.0
Percentage of Target Sequences with motif38.07%
Number of Background Sequences with motif436.7
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets49.9 +/- 20.7bp
Average Position of motif in Background50.8 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:TTGGCHNNRDGCCAAN
TTGGCANNNTGCCAAG
 G A C T A C G T A C T G A C T G T G A C G C T A A T G C A G T C T C A G C G A T A C T G A G T C A G T C G T C A T C G A T C G A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:forward strand
Alignment:TTGGCHNNRDGCCAAN
CTGGCAGNCTGCCA--
 G A C T A C G T A C T G A C T G T G A C G C T A A T G C A G T C T C A G C G A T A C T G A G T C A G T C G T C A T C G A T C G A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.91
Offset:1
Orientation:forward strand
Alignment:TTGGCHNNRDGCCAAN
-TGGCACCATGCCAA-
 G A C T A C G T A C T G A C T G T G A C G C T A A T G C A G T C T C A G C G A T A C T G A G T C A G T C G T C A T C G A T C G A
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TTGGCHNNRDGCCAAN
TTGGCA----------
 G A C T A C G T A C T G A C T G T G A C G C T A A T G C A G T C T C A G C G A T A C T G A G T C A G T C G T C A T C G A T C G A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCHNNRDGCCAAN
NTTGGCANN--------
 A C G T G A C T A C G T A C T G A C T G T G A C G C T A A T G C A G T C T C A G C G A T A C T G A G T C A G T C G T C A T C G A T C G A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCHNNRDGCCAAN
NNTTGGCANN--------
 A C G T A C G T G A C T A C G T A C T G A C T G T G A C G C T A A T G C A G T C T C A G C G A T A C T G A G T C A G T C G T C A T C G A T C G A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCHNNRDGCCAAN
GGTTGGCAT---------
 A C G T A C G T G A C T A C G T A C T G A C T G T G A C G C T A A T G C A G T C T C A G C G A T A C T G A G T C A G T C G T C A T C G A T C G A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCHNNRDGCCAAN
CTTGGCAA---------
 A C G T G A C T A C G T A C T G A C T G T G A C G C T A A T G C A G T C T C A G C G A T A C T G A G T C A G T C G T C A T C G A T C G A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TTGGCHNNRDGCCAAN
CAKCTGKYCYYTTYCCC--
 A C G T A C G T A C G T G A C T A C G T A C T G A C T G T G A C G C T A A T G C A G T C T C A G C G A T A C T G A G T C A G T C G T C A T C G A T C G A
T G A C G C T A A C G T T G A C C G A T A C T G A C T G A G T C A G T C A G T C A G C T A G C T A G C T A G C T G A T C T G A C G T A C A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TTGGCHNNRDGCCAAN
TGATTGGCTANN-------
 A C G T A C G T A C G T G A C T A C G T A C T G A C T G T G A C G C T A A T G C A G T C T C A G C G A T A C T G A G T C A G T C G T C A T C G A T C G A
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T