Information for 7-TSTTTTCATKGYTAKR (Motif 5)

C G A T A T C G A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G C T G C A T C G T A C A G T C T A G
Reverse Opposite:
A G C T G T A C A C G T C G T A C T A G A G T C G T A C C G T A C G A T A C T G C G T A C G T A C G T A C G T A T A G C C G T A
p-value:1e-11
log p-value:-2.683e+01
Information Content per bp:1.855
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.0 +/- 21.4bp
Average Position of motif in Background48.5 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd9/MA0913.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TSTTTTCATKGYTAKR
--TTTTTATTGC----
 C G A T A T C G A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G C T G C A T C G T A C A G T C T A G
A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TSTTTTCATKGYTAKR
GGTTGCCATGGCAA--
 C G A T A T C G A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G C T G C A T C G T A C A G T C T A G
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TSTTTTCATKGYTAKR
NGANTTTTATGGCTCN-
 A C G T C G A T A T C G A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G C T G C A T C G T A C A G T C T A G
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TSTTTTCATKGYTAKR
--NTTTTATTACN---
 C G A T A T C G A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G C T G C A T C G T A C A G T C T A G
A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TSTTTTCATKGYTAKR
TGTTTACTTAGG----
 C G A T A T C G A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G C T G C A T C G T A C A G T C T A G
A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G A C G T A C G T A C G T A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TSTTTTCATKGYTAKR
TCCATGTTTACTTTG-----
 A C G T A C G T A C G T A C G T C G A T A T C G A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G C T G C A T C G T A C A G T C T A G
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TSTTTTCATKGYTAKR
---TTTTATGGCTN--
 C G A T A T C G A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G C T G C A T C G T A C A G T C T A G
A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T

FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TSTTTTCATKGYTAKR
SCHTGTTTACAT-------
 A C G T A C G T A C G T C G A T A T C G A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G C T G C A T C G T A C A G T C T A G
T A C G T A G C G C T A C G A T C T A G A C G T C A G T C A G T G C T A A G T C G T C A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TSTTTTCATKGYTAKR
CGTTGCCATGGCAACN
 C G A T A T C G A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G C T G C A T C G T A C A G T C T A G
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TSTTTTCATKGYTAKR
NGTTGCCATGGCAA--
 C G A T A T C G A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G A G C T G C A T C G T A C A G T C T A G
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T