Information for 18-AYRCCMAWACACT (Motif 29)

C G T A A G C T C T G A A G T C A G T C G T A C G T C A C G T A G T C A A G T C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C T G A C G T C G A T A C G T A C T G C T A G A C T G A G C T C T G A A C G T
p-value:1e-6
log p-value:-1.597e+01
Information Content per bp:1.861
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.4 +/- 16.4bp
Average Position of motif in Background46.8 +/- 16.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AYRCCMAWACACT---
AACACCAAAACAAAGGA
 A C G T C G T A A G C T C T G A A G T C A G T C G T A C G T C A C G T A G T C A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:AYRCCMAWACACT---
------MRSCACTYAA
 C G T A A G C T C T G A A G T C A G T C G T A C G T C A C G T A G T C A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

EGR4/MA0733.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AYRCCMAWACACT-
TTACGCCCACGCATTT
 A C G T A C G T C G T A A G C T C T G A A G T C A G T C G T A C G T C A C G T A G T C A A G T C C G T A A G T C A C G T A C G T
G A C T G A C T G T C A A G T C C A T G A G T C T G A C A G T C G T C A A G T C A T C G A G T C T G C A G C A T G C A T G C A T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AYRCCMAWACACT---
------AAGCACTTAA
 C G T A A G C T C T G A A G T C A G T C G T A C G T C A C G T A G T C A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

EGR3/MA0732.1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AYRCCMAWACACT
CTACGCCCACGCACT
 A C G T A C G T C G T A A G C T C T G A A G T C A G T C G T A C G T C A C G T A G T C A A G T C C G T A A G T C A C G T
G A T C G A C T G T C A G A T C C T A G A T G C A G T C A G T C T G C A A T G C T C A G G A T C C T G A G A T C G C A T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.56
Offset:6
Orientation:forward strand
Alignment:AYRCCMAWACACT---
------AASCACTCAA
 C G T A A G C T C T G A A G T C A G T C G T A C G T C A C G T A G T C A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AYRCCMAWACACT
-CRCCCACGCA--
 C G T A A G C T C T G A A G T C A G T C G T A C G T C A C G T A G T C A A G T C C G T A A G T C A C G T
A C G T G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AYRCCMAWACACT--
---SSAATCCACANN
 C G T A A G C T C T G A A G T C A G T C G T A C G T C A C G T A G T C A A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PB0123.1_Foxl1_2/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AYRCCMAWACACT---
ATATCAAAACAAAACA
 C G T A A G C T C T G A A G T C A G T C G T A C G T C A C G T A G T C A A G T C C G T A A G T C A C G T A C G T A C G T A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:AYRCCMAWACACT
------NAACAAT
 C G T A A G C T C T G A A G T C A G T C G T A C G T C A C G T A G T C A A G T C C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T