Information for 12-TTTTTGAKACAAATYT (Motif 12)

A C G T G A C T A C G T A C G T A C G T C T A G C G T A A C G T C G T A A T G C C G T A C G T A C T G A A C G T A G C T A G C T
Reverse Opposite:
C T G A C T G A G T C A A G C T A C G T A C G T A T C G C G A T T G A C A C G T G A T C C G T A C G T A G T C A C T G A C G T A
p-value:1e-11
log p-value:-2.609e+01
Information Content per bp:1.777
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets61.7 +/- 34.0bp
Average Position of motif in Background54.9 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTTTTGAKACAAATYT
CATTGTTATGCAAAT--
 A C G T A C G T G A C T A C G T A C G T A C G T C T A G C G T A A C G T C G T A A T G C C G T A C G T A C T G A A C G T A G C T A G C T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTTTTGAKACAAATYT
CTTTGTTATGCAAAT--
 A C G T A C G T G A C T A C G T A C G T A C G T C T A G C G T A A C G T C G T A A T G C C G T A C G T A C T G A A C G T A G C T A G C T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TTTTTGAKACAAATYT
--TTTAAT--------
 A C G T G A C T A C G T A C G T A C G T C T A G C G T A A C G T C G T A A T G C C G T A C G T A C T G A A C G T A G C T A G C T
A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TTTTTGAKACAAATYT
GGGTTTAATTAAAATTC
 A C G T A C G T G A C T A C G T A C G T A C G T C T A G C G T A A C G T C G T A A T G C C G T A C G T A C T G A A C G T A G C T A G C T
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TTTTTGAKACAAATYT
----TTATGCAAAT--
 A C G T G A C T A C G T A C G T A C G T C T A G C G T A A C G T C G T A A T G C C G T A C G T A C T G A A C G T A G C T A G C T
A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TTTTTGAKACAAATYT
--NTTGATACATT---
 A C G T G A C T A C G T A C G T A C G T C T A G C G T A A C G T C G T A A T G C C G T A C G T A C T G A A C G T A G C T A G C T
A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TTTTTGAKACAAATYT--
--TTGTATGCAAATTAGA
 A C G T G A C T A C G T A C G T A C G T C T A G C G T A A C G T C G T A A T G C C G T A C G T A C T G A A C G T A G C T A G C T A C G T A C G T
A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TTTTTGAKACAAATYT--
--TTGTATGCAAATTAGA
 A C G T G A C T A C G T A C G T A C G T C T A G C G T A A C G T C G T A A T G C C G T A C G T A C T G A A C G T A G C T A G C T A C G T A C G T
A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TTTTTGAKACAAATYT--
--TTGTATGCAAATTAGA
 A C G T G A C T A C G T A C G T A C G T C T A G C G T A A C G T C G T A A T G C C G T A C G T A C T G A A C G T A G C T A G C T A C G T A C G T
A C G T A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TTTTTGAKACAAATYT
ATTTGCATACAATGG-
 A C G T G A C T A C G T A C G T A C G T C T A G C G T A A C G T C G T A A T G C C G T A C G T A C T G A A C G T A G C T A G C T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T