Information for 3-ATTTCATGGCCCACWY (Motif 3)

C G T A A G C T A C G T A C G T G T A C C G T A G A C T T A C G A C T G A T G C G T A C G T A C C G T A G T A C C G T A A G C T
Reverse Opposite:
C T G A G C A T C A T G C G A T A C T G A C T G A T C G G T A C A T G C C T G A C G A T A C T G C G T A C G T A C T G A C G A T
p-value:1e-18
log p-value:-4.305e+01
Information Content per bp:1.776
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.9 +/- 28.6bp
Average Position of motif in Background46.1 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ATTTCATGGCCCACWY
-TTTAATTGCN-----
 C G T A A G C T A C G T A C G T G T A C C G T A G A C T T A C G A C T G A T G C G T A C G T A C C G T A G T A C C G T A A G C T
A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T A C G T A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----ATTTCATGGCCCACWY
ANTAATTTTATGGCCGN---
 A C G T A C G T A C G T A C G T C G T A A G C T A C G T A C G T G T A C C G T A G A C T T A C G A C T G A T G C G T A C G T A C C G T A G T A C C G T A A G C T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ATTTCATGGCCCACWY
NGANTTTTATGGCTCN---
 A C G T A C G T A C G T C G T A A G C T A C G T A C G T G T A C C G T A G A C T T A C G A C T G A T G C G T A C G T A C C G T A G T A C C G T A A G C T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATTTCATGGCCCACWY
-TTTAAT---------
 C G T A A G C T A C G T A C G T G T A C C G T A G A C T T A C G A C T G A T G C G T A C G T A C C G T A G T A C C G T A A G C T
A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ATTTCATGGCCCACWY
TTTTTATTGC------
 C G T A A G C T A C G T A C G T G T A C C G T A G A C T T A C G A C T G A T G C G T A C G T A C C G T A G T A C C G T A A G C T
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ATTTCATGGCCCACWY
-TTTTATTRGN-----
 C G T A A G C T A C G T A C G T G T A C C G T A G A C T T A C G A C T G A T G C G T A C G T A C C G T A G T A C C G T A A G C T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ATTTCATGGCCCACWY
NTTTTATTACN-----
 C G T A A G C T A C G T A C G T G T A C C G T A G A C T T A C G A C T G A T G C G T A C G T A C C G T A G T A C C G T A A G C T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ATTTCATGGCCCACWY
-TTTTATGGCTN----
 C G T A A G C T A C G T A C G T G T A C C G T A G A C T T A C G A C T G A T G C G T A C G T A C C G T A G T A C C G T A A G C T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ATTTCATGGCCCACWY
NTTTTATTGG------
 C G T A A G C T A C G T A C G T G T A C C G T A G A C T T A C G A C T G A T G C G T A C G T A C C G T A G T A C C G T A A G C T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ATTTCATGGCCCACWY
NAATTTTATTACCNNN--
 A C G T A C G T C G T A A G C T A C G T A C G T G T A C C G T A G A C T T A C G A C T G A T G C G T A C G T A C C G T A G T A C C G T A A G C T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T A C G T A C G T