Information for 9-YWAGCCAATR (Motif 5)

G A C T G C T A C T G A C T A G T A G C G T A C G C T A G T C A C A G T T C A G
Reverse Opposite:
A G T C G T C A C A G T C G A T A C T G A T C G G A T C A G C T C G A T C T G A
p-value:1e-15
log p-value:-3.603e+01
Information Content per bp:1.651
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif6.79%
Number of Background Sequences with motif870.9
Percentage of Background Sequences with motif1.87%
Average Position of motif in Targets48.2 +/- 27.6bp
Average Position of motif in Background49.8 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-YWAGCCAATR-
ACTAGCCAATCA
 A C G T G A C T G C T A C T G A C T A G T A G C G T A C G C T A G T C A C A G T T C A G A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.79
Offset:2
Orientation:forward strand
Alignment:YWAGCCAATR--
--AGCCAATCGG
 G A C T G C T A C T G A C T A G T A G C G T A C G C T A G T C A C A G T T C A G A C G T A C G T
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:YWAGCCAATR
--TGCCAA--
 G A C T G C T A C T G A C T A G T A G C G T A C G C T A G T C A C A G T T C A G
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:YWAGCCAATR
CGTGCCAAG-
 G A C T G C T A C T G A C T A G T A G C G T A C G C T A G T C A C A G T T C A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---YWAGCCAATR--
AAATGGACCAATCAG
 A C G T A C G T A C G T G A C T G C T A C T G A C T A G T A G C G T A C G C T A G T C A C A G T T C A G A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:YWAGCCAATR
BCAGACWA--
 G A C T G C T A C T G A C T A G T A G C G T A C G C T A G T C A C A G T T C A G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:YWAGCCAATR--
---GACAATGNN
 G A C T G C T A C T G A C T A G T A G C G T A C G C T A G T C A C A G T T C A G A C G T A C G T
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Nr2e1/MA0676.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-YWAGCCAATR
AAAAGTCAA--
 A C G T G A C T G C T A C T G A C T A G T A G C G T A C G C T A G T C A C A G T T C A G
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:YWAGCCAATR--
-AAGGCAAGTGT
 G A C T G C T A C T G A C T A G T A G C G T A C G C T A G T C A C A G T T C A G A C G T A C G T
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-YWAGCCAATR----
CTCACACAATGGCGC
 A C G T G A C T G C T A C T G A C T A G T A G C G T A C G C T A G T C A C A G T T C A G A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C