Information for 3-NBVATGATTKATG (Motif 3)

T C G A A T G C T G A C C T G A C G A T C T A G C G T A A G C T A C G T A C G T C G T A A C G T C A T G
Reverse Opposite:
G T A C C G T A A C G T T G C A C G T A C T G A A C G T A G T C C G T A G A C T A C T G T A C G A C G T
p-value:1e-67
log p-value:-1.565e+02
Information Content per bp:1.639
Number of Target Sequences with motif106.0
Percentage of Target Sequences with motif12.63%
Number of Background Sequences with motif596.6
Percentage of Background Sequences with motif1.28%
Average Position of motif in Targets51.4 +/- 22.8bp
Average Position of motif in Background50.8 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.91
Offset:4
Orientation:reverse strand
Alignment:NBVATGATTKATG--
----TGATTTATGGC
 T C G A A T G C T G A C C T G A C G A T C T A G C G T A A G C T A C G T A C G T C G T A A C G T C A T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.91
Offset:4
Orientation:reverse strand
Alignment:NBVATGATTKATG-
----TGATTGATGA
 T C G A A T G C T G A C C T G A C G A T C T A G C G T A A G C T A C G T A C G T C G T A A C G T C A T G A C G T
A C G T A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.87
Offset:4
Orientation:reverse strand
Alignment:NBVATGATTKATG---
----TGATTTATGGCC
 T C G A A T G C T G A C C T G A C G A T C T A G C G T A A G C T A C G T A C G T C G T A A C G T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.87
Offset:3
Orientation:reverse strand
Alignment:NBVATGATTKATG---
---NTGATTTATGGCC
 T C G A A T G C T G A C C T G A C G A T C T A G C G T A A G C T A C G T A C G T C G T A A C G T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.86
Offset:3
Orientation:reverse strand
Alignment:NBVATGATTKATG--
---ATGATKGATGRC
 T C G A A T G C T G A C C T G A C G A T C T A G C G T A A G C T A C G T A C G T C G T A A C G T C A T G A C G T A C G T
A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.86
Offset:4
Orientation:forward strand
Alignment:NBVATGATTKATG---
----TGATTRATGGCY
 T C G A A T G C T G A C C T G A C G A T C T A G C G T A A G C T A C G T A C G T C G T A A C G T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.86
Offset:4
Orientation:reverse strand
Alignment:NBVATGATTKATG---
----TGATTTATGGCC
 T C G A A T G C T G A C C T G A C G A T C T A G C G T A A G C T A C G T A C G T C G T A A C G T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:NBVATGATTKATG-
--TTTGATTGATGN
 T C G A A T G C T G A C C T G A C G A T C T A G C G T A A G C T A C G T A C G T C G T A A C G T C A T G A C G T
A C G T A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:NBVATGATTKATG---
NNANTGATTGATNTTN
 T C G A A T G C T G A C C T G A C G A T C T A G C G T A A G C T A C G T A C G T C G T A A C G T C A T G A C G T A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:10
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:NBVATGATTKATG---
NNANTGATTGATNNNN
 T C G A A T G C T G A C C T G A C G A T C T A G C G T A A G C T A C G T A C G T C G T A A C G T C A T G A C G T A C G T A C G T
G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C