Information for 2-BNVTGASTGACAGVBV (Motif 2)

A G T C A C T G T C A G C G A T T A C G T C G A A T G C C G A T A C T G C G T A A G T C C T G A A T C G T A C G A G T C T A C G
Reverse Opposite:
A T G C T C A G A T G C T A G C A G C T A C T G A C G T A G T C G C T A T A C G A G C T A T G C G C T A A G T C T A G C T C A G
p-value:1e-70
log p-value:-1.614e+02
Information Content per bp:1.589
Number of Target Sequences with motif95.0
Percentage of Target Sequences with motif11.32%
Number of Background Sequences with motif418.5
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets52.4 +/- 17.5bp
Average Position of motif in Background51.8 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.95
Offset:2
Orientation:reverse strand
Alignment:BNVTGASTGACAGVBV
--NTGATTGACAGN--
 A G T C A C T G T C A G C G A T T A C G T C G A A T G C C G A T A C T G C G T A A G T C C T G A A T C G T A C G A G T C T A C G
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.94
Offset:3
Orientation:reverse strand
Alignment:BNVTGASTGACAGVBV
---TGAGTGACAGSC-
 A G T C A C T G T C A G C G A T T A C G T C G A A T G C C G A T A C T G C G T A A G T C C T G A A T C G T A C G A G T C T A C G
A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:BNVTGASTGACAGVBV
--BTGABTGACAGS--
 A G T C A C T G T C A G C G A T T A C G T C G A A T G C C G A T A C T G C G T A A G T C C T G A A T C G T A C G A G T C T A C G
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.82
Offset:6
Orientation:forward strand
Alignment:BNVTGASTGACAGVBV
------TTGACAG---
 A G T C A C T G T C A G C G A T T A C G T C G A A T G C C G A T A C T G C G T A A G T C C T G A A T C G T A C G A G T C T A C G
A C G T A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.82
Offset:6
Orientation:forward strand
Alignment:BNVTGASTGACAGVBV
------TTGACAGG--
 A G T C A C T G T C A G C G A T T A C G T C G A A T G C C G A T A C T G C G T A A G T C C T G A A T C G T A C G A G T C T A C G
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.82
Offset:6
Orientation:forward strand
Alignment:BNVTGASTGACAGVBV
------TTGACAGC--
 A G T C A C T G T C A G C G A T T A C G T C G A A T G C C G A T A C T G C G T A A G T C C T G A A T C G T A C G A G T C T A C G
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:7
Score:0.81
Offset:3
Orientation:reverse strand
Alignment:BNVTGASTGACAGVBV---
---NNATTGACAGGTGCTT
 A G T C A C T G T C A G C G A T T A C G T C G A A T G C C G A T A C T G C G T A A G T C C T G A A T C G T A C G A G T C T A C G A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.80
Offset:5
Orientation:reverse strand
Alignment:BNVTGASTGACAGVBV
-----VBTGWCAGCB-
 A G T C A C T G T C A G C G A T T A C G T C G A A T G C C G A T A C T G C G T A A G T C C T G A A T C G T A C G A G T C T A C G
A C G T A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.80
Offset:2
Orientation:forward strand
Alignment:BNVTGASTGACAGVBV---
--GATATTGACAGCTGCGT
 A G T C A C T G T C A G C G A T T A C G T C G A A T G C C G A T A C T G C G T A A G T C C T G A A T C G T A C G A G T C T A C G A C G T A C G T A C G T
A C G T A C G T C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

PH0140.1_Pknox1/Jaspar

Match Rank:10
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:BNVTGASTGACAGVBV---
---GGATTGACAGGTCNTT
 A G T C A C T G T C A G C G A T T A C G T C G A A T G C C G A T A C T G C G T A A G T C C T G A A T C G T A C G A G T C T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T