Information for 1-CCACCAGRTGGCRSYR (Motif 1)

A G T C A G T C G C T A A T G C A G T C C G T A A C T G C T A G A C G T A C T G A C T G G A T C C T A G T A C G G A C T T C G A
Reverse Opposite:
A G C T C T G A A T G C G A T C C A T G G T A C A G T C T G C A A G T C A G T C C G A T T C A G T A C G C G A T A C T G C T A G
p-value:1e-74
log p-value:-1.723e+02
Information Content per bp:1.696
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif6.79%
Number of Background Sequences with motif63.2
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets54.4 +/- 19.9bp
Average Position of motif in Background52.5 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.96
Offset:-3
Orientation:reverse strand
Alignment:---CCACCAGRTGGCRSYR-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C G C T A A T G C A G T C C G T A A C T G C T A G A C G T A C T G A C T G G A T C C T A G T A C G G A C T T C G A A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.96
Offset:-3
Orientation:forward strand
Alignment:---CCACCAGRTGGCRSYR
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C G C T A A T G C A G T C C G T A A C T G C T A G A C G T A C T G A C T G G A T C C T A G T A C G G A C T T C G A
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGRTGGCRSYR---
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C G C T A A T G C A G T C C G T A A C T G C T A G A C G T A C T G A C T G G A T C C T A G T A C G G A C T T C G A A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CCACCAGRTGGCRSYR
--AACAGATGGC----
 A G T C A G T C G C T A A T G C A G T C C G T A A C T G C T A G A C G T A C T G A C T G G A T C C T A G T A C G G A C T T C G A
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGRTGGCRSYR
DCHCAGCAGGRGGCC---
 A C G T A C G T A G T C A G T C G C T A A T G C A G T C C G T A A C T G C T A G A C G T A C T G A C T G G A T C C T A G T A C G G A C T T C G A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCACCAGRTGGCRSYR
CACAGCAGGGGG-----
 A C G T A G T C A G T C G C T A A T G C A G T C C G T A A C T G C T A G A C G T A C T G A C T G G A T C C T A G T A C G G A C T T C G A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCACCAGRTGGCRSYR
--AACAGATGGT----
 A G T C A G T C G C T A A T G C A G T C C G T A A C T G C T A G A C G T A C T G A C T G G A T C C T A G T A C G G A C T T C G A
A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCACCAGRTGGCRSYR
---CAAGATGGCGGC-
 A G T C A G T C G C T A A T G C A G T C C G T A A C T G C T A G A C G T A C T G A C T G G A T C C T A G T A C G G A C T T C G A
A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCACCAGRTGGCRSYR
VNAVCAGCTGGC----
 A G T C A G T C G C T A A T G C A G T C C G T A A C T G C T A G A C G T A C T G A C T G G A T C C T A G T A C G G A C T T C G A
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCACCAGRTGGCRSYR
--NNCAGGTGNN----
 A G T C A G T C G C T A A T G C A G T C C G T A A C T G C T A G A C G T A C T G A C T G G A T C C T A G T A C G G A C T T C G A
A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T A C G T A C G T