Information for 15-TTACTAAGGC (Motif 39)

A C G T A C G T C G T A A G T C A C G T C G T A C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T A C G T C G T A A C T G A C G T C G T A C G T A
p-value:1e-5
log p-value:-1.246e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets87.0 +/- 7.1bp
Average Position of motif in Background52.3 +/- 9.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0054.1_Rfx3_1/Jaspar

Match Rank:1
Score:0.65
Offset:-8
Orientation:reverse strand
Alignment:--------TTACTAAGGC-----
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTACTAAGGC
GTTAACTAGN--
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A C G T A A C T G A C T G A G T C
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTACTAAGGC
CTGTTGCTAGGS-
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A C G T A A C T G A C T G A G T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTACTAAGGC-
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A C G T A A C T G A C T G A G T C A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTACTAAGGC-
NCCGTTGCTANGNGN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A C G T A A C T G A C T G A G T C A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TTACTAAGGC
-AACAAAGG-
 A C G T A C G T C G T A A G T C A C G T C G T A C G T A A C T G A C T G A G T C
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTACTAAGGC---
GTTGCCATGGNAAC
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A C G T A A C T G A C T G A G T C A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

RFX5/MA0510.2/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TTACTAAGGC----
NGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

Foxa2/MA0047.2/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TTACTAAGGC
TGTTTACTTAGG-
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A C G T A A C T G A C T G A G T C
A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----TTACTAAGGC
AATATTAATAAAGA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A C G T A A C T G A C T G A G T C
G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A