Information for 20-GTCATGCATGGATTAA (Motif 34)

C A T G A G C T G T A C C T G A A G C T C T A G G A T C C G T A A C G T A C T G T A C G C G T A C G A T A C G T T G C A T C G A
Reverse Opposite:
A G C T A C G T C G T A C G T A C G A T A G T C A G T C C G T A C G A T C A T G A G T C C T G A A G C T A C T G C T G A G A T C
p-value:1e-7
log p-value:-1.740e+01
Information Content per bp:1.721
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.2 +/- 29.1bp
Average Position of motif in Background37.5 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax6/MA0069.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTCATGCATGGATTAA
TTCACGCATGAGTT--
 C A T G A G C T G T A C C T G A A G C T C T A G G A T C C G T A A C G T A C T G T A C G C G T A C G A T A C G T T G C A T C G A
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTCATGCATGGATTAA
CGTCACGCATGACTGCA
 A C G T C A T G A G C T G T A C C T G A A G C T C T A G G A T C C G T A A C G T A C T G T A C G C G T A C G A T A C G T T G C A T C G A
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Pitx1/MA0682.1/Jaspar

Match Rank:3
Score:0.61
Offset:8
Orientation:reverse strand
Alignment:GTCATGCATGGATTAA
--------GGGATTAA
 C A T G A G C T G T A C C T G A A G C T C T A G G A T C C G T A A C G T A C T G T A C G C G T A C G A T A C G T T G C A T C G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTCATGCATGGATTAA
ACTATGAATGAATGAT
 C A T G A G C T G T A C C T G A A G C T C T A G G A T C C G T A A C G T A C T G T A C G C G T A C G A T A C G T T G C A T C G A
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0185.1_Tcf1_2/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GTCATGCATGGATTAA-
---TTGCCCGGATTAGG
 C A T G A G C T G T A C C T G A A G C T C T A G G A T C C G T A A C G T A C T G T A C G C G T A C G A T A C G T T G C A T C G A A C G T
A C G T A C G T A C G T C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

PAX9/MA0781.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTCATGCATGGATTAA
CGTCACGCATGACTGCA
 A C G T C A T G A G C T G T A C C T G A A G C T C T A G G A T C C G T A A C G T A C T G T A C G C G T A C G A T A C G T T G C A T C G A
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:GTCATGCATGGATTAA-
-------VRGGATTARN
 C A T G A G C T G T A C C T G A A G C T C T A G G A T C C G T A A C G T A C T G T A C G C G T A C G A T A C G T T G C A T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GTCATGCATGGATTAA-----
----TGAAGGGATTAATCATC
 C A T G A G C T G T A C C T G A A G C T C T A G G A T C C G T A A C G T A C T G T A C G C G T A C G A T A C G T T G C A T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.60
Offset:8
Orientation:reverse strand
Alignment:GTCATGCATGGATTAA-
--------GGGATTANN
 C A T G A G C T G T A C C T G A A G C T C T A G G A T C C G T A A C G T A C T G T A C G C G T A C G A T A C G T T G C A T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GTCATGCATGGATTAA-----
----NNAAGGGATTAACGANT
 C A T G A G C T G T A C C T G A A G C T C T A G G A T C C G T A A C G T A C T G T A C G C G T A C G A T A C G T T G C A T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T