Information for 17-AAAGACAGACTTAGAG (Motif 28)

C T G A C G T A C G T A C T A G C G T A G T A C C G T A A T C G C G T A A G T C A C G T A C G T C G T A A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C G T C G T A C G T A A C T G C G A T A T G C A C G T A C T G A C G T A G T C C G A T A C G T G A C T
p-value:1e-8
log p-value:-2.016e+01
Information Content per bp:1.919
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.0 +/- 15.1bp
Average Position of motif in Background31.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:1
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:AAAGACAGACTTAGAG----
--------GGTTAGAGACCT
 C T G A C G T A C G T A C T A G C G T A G T A C C G T A A T C G C G T A A G T C A C G T A C G T C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:AAAGACAGACTTAGAG
-ATGCCAGACN-----
 C T G A C G T A C G T A C T A G C G T A G T A C C G T A A T C G C G T A A G T C A C G T A C G T C G T A A C T G C G T A A C T G
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.47
Offset:4
Orientation:reverse strand
Alignment:AAAGACAGACTTAGAG
----BCAGACWA----
 C T G A C G T A C G T A C T A G C G T A G T A C C G T A A T C G C G T A A G T C A C G T A C G T C G T A A C T G C G T A A C T G
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:4
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:AAAGACAGACTTAGAG--
WNAGTCADAVTGAAACTN
 C T G A C G T A C G T A C T A G C G T A G T A C C G T A A T C G C G T A A G T C A C G T A C G T C G T A A C T G C G T A A C T G A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:5
Score:0.46
Offset:-2
Orientation:reverse strand
Alignment:--AAAGACAGACTTAGAG
GGAAANTGAAACTNA---
 A C G T A C G T C T G A C G T A C G T A C T A G C G T A G T A C C G T A A T C G C G T A A G T C A C G T A C G T C G T A A C T G C G T A A C T G
T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A A C G T A C G T A C G T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:6
Score:0.45
Offset:1
Orientation:reverse strand
Alignment:AAAGACAGACTTAGAG
-BAGTCATANTGAAAG
 C T G A C G T A C G T A C T A G C G T A G T A C C G T A A T C G C G T A A G T C A C G T A C G T C G T A A C T G C G T A A C T G
A C G T A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.45
Offset:1
Orientation:forward strand
Alignment:AAAGACAGACTTAGAG
-TTGACAG--------
 C T G A C G T A C G T A C T A G C G T A G T A C C G T A A T C G C G T A A G T C A C G T A C G T C G T A A C T G C G T A A C T G
A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.45
Offset:-1
Orientation:forward strand
Alignment:-AAAGACAGACTTAGAG
AGGTGHCAGACA-----
 A C G T C T G A C G T A C G T A C T A G C G T A G T A C C G T A A T C G C G T A A G T C A C G T A C G T C G T A A C T G C G T A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:9
Score:0.45
Offset:3
Orientation:forward strand
Alignment:AAAGACAGACTTAGAG
---AAGAGGATTAG--
 C T G A C G T A C G T A C T A G C G T A G T A C C G T A A T C G C G T A A G T C A C G T A C G T C G T A A C T G C G T A A C T G
A C G T A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.45
Offset:5
Orientation:reverse strand
Alignment:AAAGACAGACTTAGAG
-----NGGGATTA---
 C T G A C G T A C G T A C T A G C G T A G T A C C G T A A T C G C G T A A G T C A C G T A C G T C G T A A C T G C G T A A C T G
A C G T A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T