Information for 17-TTGGCTAGATTAG (Motif 24)

A C G T C G A T A C T G A T C G A T G C C G A T C G T A C A T G G T C A C A G T C A G T C G T A A C T G
Reverse Opposite:
T G A C C G A T G T C A G C T A A C G T G T A C G C A T C G T A A T C G A T G C A G T C C G T A G T C A
p-value:1e-9
log p-value:-2.145e+01
Information Content per bp:1.723
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif39.5
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets31.7 +/- 28.3bp
Average Position of motif in Background49.9 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTGGCTAGATTAG
TTGGCA-------
 A C G T C G A T A C T G A T C G A T G C C G A T C G T A C A T G G T C A C A G T C A G T C G T A A C T G
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCTAGATTAG
NTTGGCANN-----
 A C G T A C G T C G A T A C T G A T C G A T G C C G A T C G T A C A T G G T C A C A G T C A G T C G T A A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTGGCTAGATTAG
TGATTGGCTANN----
 A C G T A C G T A C G T A C G T C G A T A C T G A T C G A T G C C G A T C G T A C A T G G T C A C A G T C A G T C G T A A C T G
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TTGGCTAGATTAG
TWGTCTGV-----
 A C G T C G A T A C T G A T C G A T G C C G A T C G T A C A T G G T C A C A G T C A G T C G T A A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TTGGCTAGATTAG
-TGTCTAGACG--
 A C G T C G A T A C T G A T C G A T G C C G A T C G T A C A T G G T C A C A G T C A G T C G T A A C T G
A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCTAGATTAG
NNTTGGCANN-----
 A C G T A C G T A C G T C G A T A C T G A T C G A T G C C G A T C G T A C A T G G T C A C A G T C A G T C G T A A C T G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTGGCTAGATTAG-
TTGCCCGGATTAGG
 A C G T C G A T A C T G A T C G A T G C C G A T C G T A C A T G G T C A C A G T C A G T C G T A A C T G A C G T
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTGGCTAGATTAG
CCGATTGGCT-------
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G A T C G A T G C C G A T C G T A C A T G G T C A C A G T C A G T C G T A A C T G
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E2F7/MA0758.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCTAGATTAG
TTTTGGCGGGAAAA-
 A C G T A C G T A C G T C G A T A C T G A T C G A T G C C G A T C G T A C A T G G T C A C A G T C A G T C G T A A C T G
C G A T C G A T G C A T C G A T T A C G A C T G A G T C A C T G A T C G A T C G C T G A C T G A G C T A G C T A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCTAGATTAG
CTTGGCAA------
 A C G T A C G T C G A T A C T G A T C G A T G C C G A T C G T A C A T G G T C A C A G T C A G T C G T A A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T