Information for 16-RGGADWTTCTKGCTST (Motif 31)

C T G A C T A G A C T G T C G A C G A T C G A T C G A T A G C T G A T C A C G T A C G T T A C G A T G C A G C T A T C G G A C T
Reverse Opposite:
C T G A T A C G C T G A A T C G A T G C G T C A C G T A C T A G C T G A G C T A G C T A G C T A A G C T G T A C A G T C A G C T
p-value:1e-9
log p-value:-2.215e+01
Information Content per bp:1.625
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.15%
Number of Background Sequences with motif289.0
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets55.8 +/- 23.0bp
Average Position of motif in Background50.6 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RGGADWTTCTKGCTST
NGANTTTTATGGCTCN
 C T G A C T A G A C T G T C G A C G A T C G A T C G A T A G C T G A T C A C G T A C G T T A C G A T G C A G C T A T C G G A C T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.56
Offset:5
Orientation:forward strand
Alignment:RGGADWTTCTKGCTST
-----GGTCTGGCAT-
 C T G A C T A G A C T G T C G A C G A T C G A T C G A T A G C T G A T C A C G T A C G T T A C G A T G C A G C T A T C G G A C T
A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RGGADWTTCTKGCTST-
--NNAATTCTCGNTNAN
 C T G A C T A G A C T G T C G A C G A T C G A T C G A T A G C T G A T C A C G T A C G T T A C G A T G C A G C T A T C G G A C T A C G T
A C G T A C G T A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:RGGADWTTCTKGCTST
----TTTTATGGCTN-
 C T G A C T A G A C T G T C G A C G A T C G A T C G A T A G C T G A T C A C G T A C G T T A C G A T G C A G C T A T C G G A C T
A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:RGGADWTTCTKGCTST-
NNTNNTGTCTGGNNTNG
 C T G A C T A G A C T G T C G A C G A T C G A T C G A T A G C T G A T C A C G T A C G T T A C G A T G C A G C T A T C G G A C T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:RGGADWTTCTKGCTST
---NTTTTATGAC---
 C T G A C T A G A C T G T C G A C G A T C G A T C G A T A G C T G A T C A C G T A C G T T A C G A T G C A G C T A T C G G A C T
A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:RGGADWTTCTKGCTST
----------NGCTN-
 C T G A C T A G A C T G T C G A C G A T C G A T C G A T A G C T G A T C A C G T A C G T T A C G A T G C A G C T A T C G G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:8
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---RGGADWTTCTKGCTST-
NANTGGAAAAANTGAGTCAN
 A C G T A C G T A C G T C T G A C T A G A C T G T C G A C G A T C G A T C G A T A G C T G A T C A C G T A C G T T A C G A T G C A G C T A T C G G A C T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:RGGADWTTCTKGCTST-
-------ACTTCCTGTT
 C T G A C T A G A C T G T C G A C G A T C G A T C G A T A G C T G A T C A C G T A C G T T A C G A T G C A G C T A T C G G A C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:RGGADWTTCTKGCTST-
-----TGTCTGDCACCT
 C T G A C T A G A C T G T C G A C G A T C G A T C G A T A G C T G A T C A C G T A C G T T A C G A T G C A G C T A T C G G A C T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T