Information for 5-WGGCTGCCTGCAG (Motif 9)

C G A T C T A G C T A G A G T C A G C T A T C G G A T C T G A C C A G T C T A G T A G C C G T A T C A G
Reverse Opposite:
A G T C C G A T A T C G A G T C G T C A A C T G C T A G A T G C C T G A C T A G A G T C G A T C G C T A
p-value:1e-12
log p-value:-2.853e+01
Information Content per bp:1.675
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif113.0
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets48.3 +/- 26.4bp
Average Position of motif in Background50.4 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:WGGCTGCCTGCAG
-NGCTN-------
 C G A T C T A G C T A G A G T C A G C T A T C G G A T C T G A C C A G T C T A G T A G C C G T A T C A G
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----WGGCTGCCTGCAG
GTCATGCHTGRCTGS--
 A C G T A C G T A C G T A C G T C G A T C T A G C T A G A G T C A G C T A T C G G A T C T G A C C A G T C T A G T A G C C G T A T C A G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:WGGCTGCCTGCAG
--GCTGTG-----
 C G A T C T A G C T A G A G T C A G C T A T C G G A T C T G A C C A G T C T A G T A G C C G T A T C A G
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-WGGCTGCCTGCAG
TWGTCTGV------
 A C G T C G A T C T A G C T A G A G T C A G C T A T C G G A T C T G A C C A G T C T A G T A G C C G T A T C A G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:WGGCTGCCTGCAG-
TGGCAGNCTGCCAG
 C G A T C T A G C T A G A G T C A G C T A T C G G A T C T G A C C A G T C T A G T A G C C G T A T C A G A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:WGGCTGCCTGCAG
---CTGTCTGG--
 C G A T C T A G C T A G A G T C A G C T A T C G G A T C T G A C C A G T C T A G T A G C C G T A T C A G
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

PB0155.1_Osr2_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--WGGCTGCCTGCAG-
ACTTGCTACCTACACC
 A C G T A C G T C G A T C T A G C T A G A G T C A G C T A T C G G A T C T G A C C A G T C T A G T A G C C G T A T C A G A C G T
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:WGGCTGCCTGCAG
-VBSYGTCTGG--
 C G A T C T A G C T A G A G T C A G C T A T C G G A T C T G A C C A G T C T A G T A G C C G T A T C A G
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:WGGCTGCCTGCAG---
-GGCCYCCTGCTGDGH
 C G A T C T A G C T A G A G T C A G C T A T C G G A T C T G A C C A G T C T A G T A G C C G T A T C A G A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Mafb/MA0117.2/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---WGGCTGCCTGCAG
AAAATGCTGACT----
 A C G T A C G T A C G T C G A T C T A G C T A G A G T C A G C T A T C G G A T C T G A C C A G T C T A G T A G C C G T A T C A G
C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T A C G T A C G T A C G T A C G T