Information for 20-RSAWRCAKWCTGCWKG (Motif 41)

C T G A A T G C G T C A C G A T C T A G A G T C C G T A A C T G C G T A G T A C A C G T A C T G A G T C C G T A A C G T A C T G
Reverse Opposite:
A G T C G T C A C G A T A C T G A G T C C G T A A C T G C G A T G T A C A C G T A C T G A G T C C G T A A C G T A T C G A G C T
p-value:1e-3
log p-value:-8.996e+00
Information Content per bp:1.809
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 18.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:RSAWRCAKWCTGCWKG-
--ATGCATWATGCATRW
 C T G A A T G C G T C A C G A T C T A G A G T C C G T A A C T G C G T A G T A C A C G T A C T G A G T C C G T A A C G T A C T G A C G T
A C G T A C G T C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:RSAWRCAKWCTGCWKG-
--ATGAATWATTCATGA
 C T G A A T G C G T C A C G A T C T A G A G T C C G T A A C T G C G T A G T A C A C G T A C T G A G T C C G T A A C G T A C T G A C G T
A C G T A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.53
Offset:2
Orientation:forward strand
Alignment:RSAWRCAKWCTGCWKG
--ATGCATAATTCA--
 C T G A A T G C G T C A C G A T C T A G A G T C C G T A A C T G C G T A G T A C A C G T A C T G A G T C C G T A A C G T A C T G
A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:RSAWRCAKWCTGCWKG
------DCTCAGCAGG
 C T G A A T G C G T C A C G A T C T A G A G T C C G T A A C T G C G T A G T A C A C G T A C T G A G T C C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.50
Offset:2
Orientation:forward strand
Alignment:RSAWRCAKWCTGCWKG---
--AATCGCACTGCATTCCG
 C T G A A T G C G T C A C G A T C T A G A G T C C G T A A C T G C G T A G T A C A C G T A C T G A G T C C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.49
Offset:5
Orientation:forward strand
Alignment:RSAWRCAKWCTGCWKG
-----CTGTCTGG---
 C T G A A T G C G T C A C G A T C T A G A G T C C G T A A C T G C G T A G T A C A C G T A C T G A G T C C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.48
Offset:4
Orientation:forward strand
Alignment:RSAWRCAKWCTGCWKG
----ACATCCTGNT--
 C T G A A T G C G T C A C G A T C T A G A G T C C G T A A C T G C G T A G T A C A C G T A C T G A G T C C G T A A C G T A C T G
A C G T A C G T A C G T A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.48
Offset:5
Orientation:forward strand
Alignment:RSAWRCAKWCTGCWKG
-----TWGTCTGV---
 C T G A A T G C G T C A C G A T C T A G A G T C C G T A A C T G C G T A G T A C A C G T A C T G A G T C C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:9
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:RSAWRCAKWCTGCWKG
-----NNNANTGA---
 C T G A A T G C G T C A C G A T C T A G A G T C C G T A A C T G C G T A G T A C A C G T A C T G A G T C C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.47
Offset:4
Orientation:forward strand
Alignment:RSAWRCAKWCTGCWKG---
----CCACACAGCAGGAGA
 C T G A A T G C G T C A C G A T C T A G A G T C C G T A A C T G C G T A G T A C A C G T A C T G A G T C C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A