Information for 12-BGTGTCCTGAGCVAGC (Motif 28)

A G C T A C T G A C G T A C T G C A G T A G T C A G T C A G C T A T C G C G T A A C T G A G T C T C G A C T G A C T A G A G T C
Reverse Opposite:
C T A G A G T C A G C T A C G T C T A G A G T C C G A T A T G C C T G A A C T G A C T G G T C A A G T C C G T A A G T C T C G A
p-value:1e-8
log p-value:-1.978e+01
Information Content per bp:1.779
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.8 +/- 29.9bp
Average Position of motif in Background9.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MTF1/MA0863.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:BGTGTCCTGAGCVAGC
-GTGCCGTGTGCAAA-
 A G C T A C T G A C G T A C T G C A G T A G T C A G T C A G C T A T C G C G T A A C T G A G T C T C G A C T G A C T A G A G T C
A C G T C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:BGTGTCCTGAGCVAGC
--TGACCTYA------
 A G C T A C T G A C G T A C T G C A G T A G T C A G T C A G C T A T C G C G T A A C T G A G T C T C G A C T G A C T A G A G T C
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:BGTGTCCTGAGCVAGC
-GTGACCTT-------
 A G C T A C T G A C G T A C T G C A G T A G T C A G T C A G C T A T C G C G T A A C T G A G T C T C G A C T G A C T A G A G T C
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:BGTGTCCTGAGCVAGC-
--TGWCCTCARNTGACC
 A G C T A C T G A C G T A C T G C A G T A G T C A G T C A G C T A T C G C G T A A C T G A G T C T C G A C T G A C T A G A G T C A C G T
A C G T A C G T G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:BGTGTCCTGAGCVAGC
-CTGACCTTTG-----
 A G C T A C T G A C G T A C T G C A G T A G T C A G T C A G C T A T C G C G T A A C T G A G T C T C G A C T G A C T A G A G T C
A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:BGTGTCCTGAGCVAGC
--TGACCT--------
 A G C T A C T G A C G T A C T G C A G T A G T C A G T C A G C T A T C G C G T A A C T G A G T C T C G A C T G A C T A G A G T C
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:BGTGTCCTGAGCVAGC
-ATGCCCTGAGGC---
 A G C T A C T G A C G T A C T G C A G T A G T C A G T C A G C T A T C G C G T A A C T G A G T C T C G A C T G A C T A G A G T C
A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C A C G T A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:BGTGTCCTGAGCVAGC
-GTGGCGTGACNG---
 A G C T A C T G A C G T A C T G C A G T A G T C A G T C A G C T A T C G C G T A A C T G A G T C T C G A C T G A C T A G A G T C
A C G T T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:BGTGTCCTGAGCVAGC
-CTGTTCCTGG-----
 A G C T A C T G A C G T A C T G C A G T A G T C A G T C A G C T A T C G C G T A A C T G A G T C T C G A C T G A C T A G A G T C
A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--BGTGTCCTGAGCVAGC
CNNTTGACCTTTG-----
 A C G T A C G T A G C T A C T G A C G T A C T G C A G T A G T C A G T C A G C T A T C G C G T A A C T G A G T C T C G A C T G A C T A G A G T C
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T A C G T A C G T A C G T