Information for 6-TGCGGGATBCCGCACC (Motif 13)

A C G T T C A G A G T C A C T G A C T G T C A G G T C A A C G T A C G T A G T C A G T C A T C G A G T C C T G A A T G C A G T C
Reverse Opposite:
A C T G A T C G A G C T C T A G A T G C C T A G A C T G T C G A G T C A A C G T A G T C A G T C A G T C A C T G A G T C C G T A
p-value:1e-11
log p-value:-2.554e+01
Information Content per bp:1.809
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.0 +/- 20.7bp
Average Position of motif in Background84.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GCM2/MA0767.1/Jaspar

Match Rank:1
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TGCGGGATBCCGCACC
TATGCGGGTA--------
 A C G T A C G T A C G T T C A G A G T C A C T G A C T G T C A G G T C A A C G T A C G T A G T C A G T C A T C G A G T C C T G A A T G C A G T C
A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:2
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TGCGGGATBCCGCACC
NNNNATGCGGGTNNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G T C A C T G A C T G T C A G G T C A A C G T A C G T A G T C A G T C A T C G A G T C C T G A A T G C A G T C
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:3
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TGCGGGATBCCGCACC
-GGGGGAATCCCC---
 A C G T T C A G A G T C A C T G A C T G T C A G G T C A A C G T A C G T A G T C A G T C A T C G A G T C C T G A A T G C A G T C
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TGCGGGATBCCGCACC
---GGAAATCCCC---
 A C G T T C A G A G T C A C T G A C T G T C A G G T C A A C G T A C G T A G T C A G T C A T C G A G T C C T G A A T G C A G T C
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TGCGGGATBCCGCACC
-AGGGGAATCCCCT--
 A C G T T C A G A G T C A C T G A C T G T C A G G T C A A C G T A C G T A G T C A G T C A T C G A G T C C T G A A T G C A G T C
A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T A C G T A C G T

GCM1/MA0646.1/Jaspar

Match Rank:6
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGCGGGATBCCGCACC
CATGCGGGTAC-------
 A C G T A C G T A C G T T C A G A G T C A C T G A C T G T C A G G T C A A C G T A C G T A G T C A G T C A T C G A G T C C T G A A T G C A G T C
A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.50
Offset:1
Orientation:forward strand
Alignment:TGCGGGATBCCGCACC
-AGGGGAATCCCCT--
 A C G T T C A G A G T C A C T G A C T G T C A G G T C A A C G T A C G T A G T C A G T C A T C G A G T C C T G A A T G C A G T C
A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:8
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:TGCGGGATBCCGCACC
--GGGAAATCCCCN--
 A C G T T C A G A G T C A C T G A C T G T C A G G T C A A C G T A C G T A G T C A G T C A T C G A G T C C T G A A T G C A G T C
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-TGCGGGATBCCGCACC
TTGGGGGCGCCCCTAG-
 A C G T A C G T T C A G A G T C A C T G A C T G T C A G G T C A A C G T A C G T A G T C A G T C A T C G A G T C C T G A A T G C A G T C
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G A C G T

REL/MA0101.1/Jaspar

Match Rank:10
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:TGCGGGATBCCGCACC
---GGAAANCCCC---
 A C G T T C A G A G T C A C T G A C T G T C A G G T C A A C G T A C G T A G T C A G T C A T C G A G T C C T G A A T G C A G T C
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T