Information for 4-VDCDCCDTGGCAACCV (Motif 6)

T C A G C A T G G T A C C A G T A G T C A G T C C T G A C A G T A C T G A C T G A G T C C T G A C G T A A G T C T A G C T C A G
Reverse Opposite:
A G T C A T C G A C T G A C G T A G C T A C T G A G T C A G T C G T C A G A C T C T A G A C T G G T C A A C T G G A T C A G T C
p-value:1e-12
log p-value:-2.892e+01
Information Content per bp:1.742
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.73%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets49.6 +/- 23.4bp
Average Position of motif in Background55.8 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:VDCDCCDTGGCAACCV
GTTGCCATGGCAAC--
 T C A G C A T G G T A C C A G T A G T C A G T C C T G A C A G T A C T G A C T G A G T C C T G A C G T A A G T C T A G C T C A G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:VDCDCCDTGGCAACCV
-TTGCCATGGCAACN-
 T C A G C A T G G T A C C A G T A G T C A G T C C T G A C A G T A C T G A C T G A G T C C T G A C G T A A G T C T A G C T C A G
A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:3
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:VDCDCCDTGGCAACCV
GTTGCCATGGCAACCG
 T C A G C A T G G T A C C A G T A G T C A G T C C T G A C A G T A C T G A C T G A G T C C T G A C G T A A G T C T A G C T C A G
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.77
Offset:2
Orientation:forward strand
Alignment:VDCDCCDTGGCAACCV-
--TACCATAGCAACGGT
 T C A G C A T G G T A C C A G T A G T C A G T C C T G A C A G T A C T G A C T G A G T C C T G A C G T A A G T C T A G C T C A G A C G T
A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.76
Offset:0
Orientation:forward strand
Alignment:VDCDCCDTGGCAACCV
GTTGCCATGGCAACM-
 T C A G C A T G G T A C C A G T A G T C A G T C C T G A C A G T A C T G A C T G A G T C C T G A C G T A A G T C T A G C T C A G
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:VDCDCCDTGGCAACCV
-TTGCCATGGCAACC-
 T C A G C A T G G T A C C A G T A G T C A G T C C T G A C A G T A C T G A C T G A G T C C T G A C G T A A G T C T A G C T C A G
A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T

RFX4/MA0799.1/Jaspar

Match Rank:7
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-VDCDCCDTGGCAACCV
CGTTGCCATGGCAACG-
 A C G T T C A G C A T G G T A C C A G T A G T C A G T C C T G A C A G T A C T G A C T G A G T C C T G A C G T A A G T C T A G C T C A G
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.71
Offset:4
Orientation:forward strand
Alignment:VDCDCCDTGGCAACCV
----SCCTAGCAACAG
 T C A G C A T G G T A C C A G T A G T C A G T C C T G A C A G T A C T G A C T G A G T C C T G A C G T A A G T C T A G C T C A G
A C G T A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

RFX3/MA0798.1/Jaspar

Match Rank:9
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-VDCDCCDTGGCAACCV
CGTTGCCATGGCAACG-
 A C G T T C A G C A T G G T A C C A G T A G T C A G T C C T G A C A G T A C T G A C T G A G T C C T G A C G T A A G T C T A G C T C A G
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--VDCDCCDTGGCAACCV-----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T T C A G C A T G G T A C C A G T A G T C A G T C C T G A C A G T A C T G A C T G A G T C C T G A C G T A A G T C T A G C T C A G A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A