Information for 10-ATAGAATGTMTATTTA (Motif 13)

C G T A A C G T G T C A C T A G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T C G T A
Reverse Opposite:
C G A T C T G A C T G A C G T A A C G T C G T A A C G T G C T A G T A C C G T A C G A T A C G T A G T C A C G T G T C A C G A T
p-value:1e-10
log p-value:-2.405e+01
Information Content per bp:1.780
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.1 +/- 25.3bp
Average Position of motif in Background49.3 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.65
Offset:5
Orientation:forward strand
Alignment:ATAGAATGTMTATTTA
-----ATGAATATTC-
 C G T A A C G T G T C A C T A G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T C G T A
A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ATAGAATGTMTATTTA-
--CTCATGAATATTCAT
 C G T A A C G T G T C A C T A G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T C G T A A C G T
A C G T A C G T T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.61
Offset:5
Orientation:forward strand
Alignment:ATAGAATGTMTATTTA
-----ATGMATATDC-
 C G T A A C G T G T C A C T A G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T C G T A
A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ATAGAATGTMTATTTA
---GAATGTTTGTTT-
 C G T A A C G T G T C A C T A G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T C G T A
A C G T A C G T A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:ATAGAATGTMTATTTA
---TATTGTTTATT--
 C G T A A C G T G T C A C T A G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T C G T A
A C G T A C G T A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:ATAGAATGTMTATTTA--
---AYATGYATATGCATR
 C G T A A C G T G T C A C T A G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T C G T A A C G T A C G T
A C G T A C G T A C G T C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

ONECUT1/MA0679.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ATAGAATGTMTATTTA
AAAAAATCGATAAT--
 C G T A A C G T G T C A C T A G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T C G T A
T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:ATAGAATGTMTATTTA----
--------KCTATTTTTRGH
 C G T A A C G T G T C A C T A G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

ONECUT2/MA0756.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:ATAGAATGTMTATTTA
AAAAAATCGATAAT--
 C G T A A C G T G T C A C T A G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T C G T A
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:10
Score:0.55
Offset:8
Orientation:forward strand
Alignment:ATAGAATGTMTATTTA----
--------GCTATTTTTGGM
 C G T A A C G T G T C A C T A G C G T A C G T A A C G T A C T G C G A T G T C A A C G T C G T A A C G T A G C T A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G A C T G C A T C G A T C T A G C A T G T G A C