Information for 5-GGCASTTCCCACG (Motif 6)

A C T G A C T G T A G C T C G A A T C G A C G T A C G T A T G C A G T C A G T C C G T A A G T C C T A G
Reverse Opposite:
A G T C C T A G A C G T C T A G A C T G A T C G C G T A C G T A T A C G A C G T A C T G A G T C A G T C
p-value:1e-13
log p-value:-3.039e+01
Information Content per bp:1.796
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.6 +/- 25.7bp
Average Position of motif in Background43.5 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.75
Offset:3
Orientation:forward strand
Alignment:GGCASTTCCCACG
---HTTTCCCASG
 A C T G A C T G T A G C T C G A A T C G A C G T A C G T A T G C A G T C A G T C C G T A A G T C C T A G
A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGCASTTCCCACG
GGGGATTTCC----
 A C G T A C T G A C T G T A G C T C G A A T C G A C G T A C G T A T G C A G T C A G T C C G T A A G T C C T A G
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GGCASTTCCCACG
NGGGGATTTCCC---
 A C G T A C G T A C T G A C T G T A G C T C G A A T C G A C G T A C G T A T G C A G T C A G T C C G T A A G T C C T A G
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGCASTTCCCACG
GGGAATTTCC----
 A C G T A C T G A C T G T A G C T C G A A T C G A C G T A C G T A T G C A G T C A G T C C G T A A G T C C T A G
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGCASTTCCCACG
GGGAATTTCC----
 A C G T A C T G A C T G T A G C T C G A A T C G A C G T A C G T A T G C A G T C A G T C C G T A A G T C C T A G
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGCASTTCCCACG
GGGGATTTCC----
 A C G T A C T G A C T G T A G C T C G A A T C G A C G T A C G T A T G C A G T C A G T C C G T A A G T C C T A G
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T A C G T

PB0115.1_Ehf_2/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGCASTTCCCACG--
TAGTATTTCCGATCTT
 A C G T A C T G A C T G T A G C T C G A A T C G A C G T A C G T A T G C A G T C A G T C C G T A A G T C C T A G A C G T A C G T
C G A T C G T A T C A G C A G T C T G A A C G T C G A T C G A T G A T C G A T C A C T G G C T A G C A T T A G C C G A T G C A T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGCASTTCCCACG
GGGGATTCCCCC-
 A C T G A C T G T A G C T C G A A T C G A C G T A C G T A T G C A G T C A G T C C G T A A G T C C T A G
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGCASTTCCCACG
TKCTGTTCCA---
 A C T G A C T G T A G C T C G A A T C G A C G T A C G T A T G C A G T C A G T C C G T A A G T C C T A G
A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGCASTTCCCACG
---ATTTTCCATT
 A C T G A C T G T A G C T C G A A T C G A C G T A C G T A T G C A G T C A G T C C G T A A G T C C T A G
A C G T A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T