Information for 3-CATCAGWGAACTCACA (Motif 3)

A G T C C G T A A G C T G T A C C G T A C T A G G C T A A C T G C G T A C T G A G T A C C A G T A G T C G T C A A G T C C T G A
Reverse Opposite:
A G C T C T A G A C G T A C T G G T C A C A T G A G C T A C G T A G T C C G A T A G T C C G A T A C T G C T G A A C G T C T A G
p-value:1e-18
log p-value:-4.284e+01
Information Content per bp:1.796
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif3.06%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.2 +/- 29.6bp
Average Position of motif in Background55.7 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:1
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----CATCAGWGAACTCACA
NNNAGATCAAAGGANNN---
 A C G T A C G T A C G T A C G T A G T C C G T A A G C T G T A C C G T A C T A G G C T A A C T G C G T A C T G A G T A C C A G T A G T C G T C A A G T C C T G A
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T A C G T A C G T A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:2
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----CATCAGWGAACTCACA
TATAGATCAAAGGAAAA---
 A C G T A C G T A C G T A C G T A G T C C G T A A G C T G T A C C G T A C T A G G C T A A C T G C G T A C T G A G T A C C A G T A G T C G T C A A G T C C T G A
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A A C G T A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:3
Score:0.49
Offset:-6
Orientation:reverse strand
Alignment:------CATCAGWGAACTCACA
TTTMCGCTTSABTGAACACN--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G C T G T A C C G T A C T A G G C T A A C T G C G T A C T G A G T A C C A G T A G T C G T C A A G T C C T G A
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:4
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----CATCAGWGAACTCACA
TCACCCATCAATAAACA----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G C T G T A C C G T A C T A G G C T A A C T G C G T A C T G A G T A C C A G T A G T C G T C A A G T C C T G A
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A A C G T A C G T A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:5
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----CATCAGWGAACTCACA
TATAGATCAAAGGAAAA---
 A C G T A C G T A C G T A C G T A G T C C G T A A G C T G T A C C G T A C T A G G C T A A C T G C G T A C T G A G T A C C A G T A G T C G T C A A G T C C T G A
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:6
Score:0.48
Offset:6
Orientation:reverse strand
Alignment:CATCAGWGAACTCACA--
------GGACCACCCACG
 A G T C C G T A A G C T G T A C C G T A C T A G G C T A A C T G C G T A C T G A G T A C C A G T A G T C G T C A A G T C C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

FOXH1/MA0479.1/Jaspar

Match Rank:7
Score:0.48
Offset:5
Orientation:forward strand
Alignment:CATCAGWGAACTCACA
-----TCCAATCCACA
 A G T C C G T A A G C T G T A C C G T A C T A G G C T A A C T G C G T A C T G A G T A C C A G T A G T C G T C A A G T C C T G A
A C G T A C G T A C G T A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

PB0040.1_Lef1_1/Jaspar

Match Rank:8
Score:0.48
Offset:-4
Orientation:reverse strand
Alignment:----CATCAGWGAACTCACA
NANAGATCAAAGGGNNN---
 A C G T A C G T A C G T A C G T A G T C C G T A A G C T G T A C C G T A C T A G G C T A A C T G C G T A C T G A G T A C C A G T A G T C G T C A A G T C C T G A
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T A C G T A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:9
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--CATCAGWGAACTCACA
NANTTCATTGAATTA---
 A C G T A C G T A G T C C G T A A G C T G T A C C G T A C T A G G C T A A C T G C G T A C T G A G T A C C A G T A G T C G T C A A G T C C T G A
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:10
Score:0.48
Offset:8
Orientation:reverse strand
Alignment:CATCAGWGAACTCACA---
--------AAACCACAGAN
 A G T C C G T A A G C T G T A C C G T A C T A G G C T A A C T G C G T A C T G A G T A C C A G T A G T C G T C A A G T C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C