Information for 3-ACATTCATAGGGT (Motif 5)

C G T A A G T C C G T A A C G T A C G T G T A C C G T A C G A T C G T A C T A G C T A G C T A G A C G T
Reverse Opposite:
C G T A A G T C A G T C G A T C A C G T C G T A A C G T A C T G G T C A C G T A A C G T A C T G A C G T
p-value:1e-13
log p-value:-3.071e+01
Information Content per bp:1.864
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.8 +/- 32.1bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----ACATTCATAGGGT
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C G T G T A C C G T A C G A T C G T A C T A G C T A G C T A G A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ACATTCATAGGGT-
ACATTCATGACACG
 C G T A A G T C C G T A A C G T A C G T G T A C C G T A C G A T C G T A C T A G C T A G C T A G A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:ACATTCATAGGGT
--ATGMATATDC-
 C G T A A G T C C G T A A C G T A C G T G T A C C G T A C G A T C G T A C T A G C T A G C T A G A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ACATTCATAGGGT-
AAAATATGCATAATAAA
 A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C G T G T A C C G T A C G A T C G T A C T A G C T A G C T A G A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ACATTCATAGGGT
GAATATTCAT-----
 A C G T A C G T C G T A A G T C C G T A A C G T A C G T G T A C C G T A C G A T C G T A C T A G C T A G C T A G A C G T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----ACATTCATAGGGT
NNCATTCATTCATNNN--
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C G T G T A C C G T A C G A T C G T A C T A G C T A G C T A G A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----ACATTCATAGGGT
GACNTCATTAATAANN-
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C G T G T A C C G T A C G A T C G T A C T A G C T A G C T A G A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----ACATTCATAGGGT
ATGAATATTCATGAG--
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C G T G T A C C G T A C G A T C G T A C T A G C T A G C T A G A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G A C G T A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ACATTCATAGGGT
CACATTCCAT----
 A C G T C G T A A G T C C G T A A C G T A C G T G T A C C G T A C G A T C G T A C T A G C T A G C T A G A C G T
G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T A C G T A C G T A C G T A C G T

TEAD1/MA0090.2/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ACATTCATAGGGT
CACATTCCAT----
 A C G T C G T A A G T C C G T A A C G T A C G T G T A C C G T A C G A T C G T A C T A G C T A G C T A G A C G T
G A T C T C G A T G A C G T C A A G C T G C A T G T A C A G T C C G T A G A C T A C G T A C G T A C G T A C G T