Information for 9-CATTCTTCNCATT (Motif 18)

A G T C C G T A A C G T A C G T G T A C A C G T A C G T A G T C C G T A G A T C C T G A A G C T A C G T
Reverse Opposite:
C G T A C T G A A G C T C A T G C G A T T A C G C G T A C G T A A C T G C G T A C G T A C G A T A C T G
p-value:1e-8
log p-value:-1.972e+01
Information Content per bp:1.830
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.65%
Number of Background Sequences with motif55.9
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets53.6 +/- 27.4bp
Average Position of motif in Background50.7 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATTCTTCNCATT
NCCATTGTTC-----
 A C G T A C G T A G T C C G T A A C G T A C G T G T A C A C G T A C G T A G T C C G T A G A T C C T G A A G C T A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CATTCTTCNCATT
YCTTTGTTCC----
 A C G T A G T C C G T A A C G T A C G T G T A C A C G T A C G T A G T C C G T A G A T C C T G A A G C T A C G T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CATTCTTCNCATT
NNNTCCTTTGTTCTNNN-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T G T A C A C G T A C G T A G T C C G T A G A T C C T G A A G C T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CATTCTTCNCATT
TNNTCCTTTGTTCTNNT-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T G T A C A C G T A C G T A G T C C G T A G A T C C T G A A G C T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CATTCTTCNCATT
NCCATTGTTY-----
 A C G T A C G T A G T C C G T A A C G T A C G T G T A C A C G T A C G T A G T C C G T A G A T C C T G A A G C T A C G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CATTCTTCNCATT
TAATTGTTCTAAAC
 A C G T A G T C C G T A A C G T A C G T G T A C A C G T A C G T A G T C C G T A G A T C C T G A A G C T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

PB0148.1_Mtf1_2/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CATTCTTCNCATT-
NNTTTTTCTTATNT
 A G T C C G T A A C G T A C G T G T A C A C G T A C G T A G T C C G T A G A T C C T G A A G C T A C G T A C G T
A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CATTCTTCNCATT
CCATTGTTYB----
 A C G T A G T C C G T A A C G T A C G T G T A C A C G T A C G T A G T C C G T A G A T C C T G A A G C T A C G T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CATTCTTCNCATT
ANNTCCATTGTTCNNN--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T G T A C A C G T A C G T A G T C C G T A G A T C C T G A A G C T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CATTCTTCNCATT
CCATTGTTTT----
 A C G T A G T C C G T A A C G T A C G T G T A C A C G T A C G T A G T C C G T A G A T C C T G A A G C T A C G T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T A C G T