Information for 6-RTTTAATWTTGTW (Motif 13)

C T G A C G A T C G A T A G C T G T C A C G T A G A C T C G A T A C G T G A C T A T C G G C A T C G T A
Reverse Opposite:
G C A T C G T A A T G C C G T A G T C A C G T A C T G A G C A T A C G T C T G A C G T A C G T A A G C T
p-value:1e-9
log p-value:-2.079e+01
Information Content per bp:1.694
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif7.95%
Number of Background Sequences with motif851.7
Percentage of Background Sequences with motif1.72%
Average Position of motif in Targets43.1 +/- 24.5bp
Average Position of motif in Background50.1 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--RTTTAATWTTGTW
NTAATTAATAT----
 A C G T A C G T C T G A C G A T C G A T A G C T G T C A C G T A G A C T C G A T A C G T G A C T A T C G G C A T C G T A
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RTTTAATWTTGTW
-TTTAAT------
 C T G A C G A T C G A T A G C T G T C A C G T A G A C T C G A T A C G T G A C T A T C G G C A T C G T A
A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:RTTTAATWTTGTW---
--CTAATATTGCTAAA
 C T G A C G A T C G A T A G C T G T C A C G T A G A C T C G A T A C G T G A C T A T C G G C A T C G T A A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:RTTTAATWTTGTW---
--CTAATATTGCTAAA
 C T G A C G A T C G A T A G C T G T C A C G T A G A C T C G A T A C G T G A C T A T C G G C A T C G T A A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Nkx2-5/MA0063.1/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:RTTTAATWTTGTW
--TTAATTG----
 C T G A C G A T C G A T A G C T G T C A C G T A G A C T C G A T A C G T G A C T A T C G G C A T C G T A
A C G T A C G T C G A T A G C T C G T A C G T A A C G T G C A T C A T G A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-RTTTAATWTTGTW
NATTCAAAT-----
 A C G T C T G A C G A T C G A T A G C T G T C A C G T A G A C T C G A T A C G T G A C T A T C G G C A T C G T A
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----RTTTAATWTTGTW
GATTAATTAATTT----
 A C G T A C G T A C G T A C G T C T G A C G A T C G A T A G C T G T C A C G T A G A C T C G A T A C G T G A C T A T C G G C A T C G T A
T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T A C G T A C G T A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-RTTTAATWTTGTW-
NNATNAATTGTTTNN
 A C G T C T G A C G A T C G A T A G C T G T C A C G T A G A C T C G A T A C G T G A C T A T C G G C A T C G T A A C G T
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----RTTTAATWTTGTW
AATCAATTCAATAATT--
 A C G T A C G T A C G T A C G T A C G T C T G A C G A T C G A T A G C T G T C A C G T A G A C T C G A T A C G T G A C T A T C G G C A T C G T A
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T A C G T A C G T

PB0176.1_Sox5_2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-RTTTAATWTTGTW-
NNCTNAATTATGANN
 A C G T C T G A C G A T C G A T A G C T G T C A C G T A G A C T C G A T A C G T G A C T A T C G G C A T C G T A A C G T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A