| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-8 | -2.015e+01 | 0.0000 | 80.0 | 8.66% | 1981.9 | 4.20% | motif file (matrix) |
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| 2 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-7 | -1.647e+01 | 0.0000 | 64.0 | 6.93% | 1579.6 | 3.35% | motif file (matrix) |
svg |
| 3 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-6 | -1.516e+01 | 0.0000 | 54.0 | 5.84% | 1287.0 | 2.73% | motif file (matrix) |
svg |
| 4 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-5 | -1.381e+01 | 0.0001 | 106.0 | 11.47% | 3348.0 | 7.09% | motif file (matrix) |
svg |
| 5 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.308e+01 | 0.0002 | 66.0 | 7.14% | 1822.3 | 3.86% | motif file (matrix) |
svg |
| 6 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-5 | -1.215e+01 | 0.0003 | 109.0 | 11.80% | 3602.8 | 7.63% | motif file (matrix) |
svg |
| 7 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-5 | -1.211e+01 | 0.0003 | 56.0 | 6.06% | 1502.2 | 3.18% | motif file (matrix) |
svg |
| 8 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-4 | -1.139e+01 | 0.0005 | 49.0 | 5.30% | 1282.9 | 2.72% | motif file (matrix) |
svg |
| 9 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.178e+00 | 0.0114 | 37.0 | 4.00% | 1008.4 | 2.14% | motif file (matrix) |
svg |
| 10 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-3 | -7.602e+00 | 0.0182 | 104.0 | 11.26% | 3826.2 | 8.11% | motif file (matrix) |
svg |
| 11 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-3 | -7.157e+00 | 0.0258 | 13.0 | 1.41% | 230.5 | 0.49% | motif file (matrix) |
svg |
| 12 |
| Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer | 1e-3 | -7.072e+00 | 0.0258 | 42.0 | 4.55% | 1266.1 | 2.68% | motif file (matrix) |
svg |
| 13 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -6.526e+00 | 0.0410 | 26.0 | 2.81% | 689.4 | 1.46% | motif file (matrix) |
svg |
| 14 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-2 | -6.522e+00 | 0.0410 | 48.0 | 5.19% | 1546.5 | 3.28% | motif file (matrix) |
svg |
| 15 |
| RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer | 1e-2 | -6.132e+00 | 0.0527 | 9.0 | 0.97% | 142.0 | 0.30% | motif file (matrix) |
svg |
| 16 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-2 | -5.621e+00 | 0.0824 | 68.0 | 7.36% | 2474.3 | 5.24% | motif file (matrix) |
svg |
| 17 |
| STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer | 1e-2 | -5.283e+00 | 0.1087 | 40.0 | 4.33% | 1319.0 | 2.79% | motif file (matrix) |
svg |
| 18 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-2 | -4.685e+00 | 0.1867 | 285.0 | 30.84% | 12887.9 | 27.30% | motif file (matrix) |
svg |
| 19 |
| ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -4.632e+00 | 0.1867 | 5.0 | 0.54% | 65.7 | 0.14% | motif file (matrix) |
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