Information for 4-CGGAGAGGTCCCTCCG (Motif 17)

A G T C C T A G A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C G T A C A G T C A C G T A G T C G T A C T A C G
Reverse Opposite:
A G T C C A T G A C T G C G T A A C T G A C T G A C T G C G T A G T A C G T A C A C G T A G T C C G A T A G T C A G T C A C T G
p-value:1e-8
log p-value:-1.902e+01
Information Content per bp:1.909
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.8 +/- 23.2bp
Average Position of motif in Background42.4 +/- 12.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CGGAGAGGTCCCTCCG
---AGRGGTCA-----
 A G T C C T A G A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C G T A C A G T C A C G T A G T C G T A C T A C G
A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:2
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CGGAGAGGTCCCTCCG
------GGTCCCGCCC
 A G T C C T A G A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C G T A C A G T C A C G T A G T C G T A C T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C G T A G T C A G T C A G T C C T A G A G T C A T G C A G T C

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:3
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CGGAGAGGTCCCTCCG
ANGNAAAGGTCA-----
 A C G T A G T C C T A G A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C G T A C A G T C A C G T A G T C G T A C T A C G
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CGGAGAGGTCCCTCCG
TCTCAAAGGTCACCTG-
 A C G T A G T C C T A G A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C G T A C A G T C A C G T A G T C G T A C T A C G
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CGGAGAGGTCCCTCCG
----AAGGTCAC----
 A G T C C T A G A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C G T A C A G T C A C G T A G T C G T A C T A C G
A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

GLI2/MA0734.1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CGGAGAGGTCCCTCCG
CAGTGTGGTCGC----
 A G T C C T A G A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C G T A C A G T C A C G T A G T C G T A C T A C G
G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CGGAGAGGTCCCTCCG
TCTCAAAGGTCACGAG-
 A C G T A G T C C T A G A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C G T A C A G T C A C G T A G T C G T A C T A C G
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CGGAGAGGTCCCTCCG
---TRAGGTCA-----
 A G T C C T A G A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C G T A C A G T C A C G T A G T C G T A C T A C G
A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0204.1_Zfp740_2/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CGGAGAGGTCCCTCCG-----
----AAATTCCCCCCGGAAGT
 A G T C C T A G A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C G T A C A G T C A C G T A G T C G T A C T A C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T G A C T G A C A G T G C A T G A T C G A T C A G T C A G T C A T G C A T G C T A C G A T C G C T G A C T G A T C A G A G C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.51
Offset:5
Orientation:forward strand
Alignment:CGGAGAGGTCCCTCCG
-----AGGTCA-----
 A G T C C T A G A C T G C G T A A C T G C G T A A C T G A C T G A C G T A G T C G T A C A G T C A C G T A G T C G T A C T A C G
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T