Information for 12-ATAACCAGGG (Motif 35)

C G T A A C G T G C T A C G T A T A G C A T G C C G T A C T A G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C C G A T T A C G A T C G A C G T C G A T G T C A G A C T
p-value:1e-6
log p-value:-1.509e+01
Information Content per bp:1.785
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif97.6
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets56.6 +/- 27.4bp
Average Position of motif in Background49.4 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---ATAACCAGGG--
NNNGTAACTANGNNA
 A C G T A C G T A C G T C G T A A C G T G C T A C G T A T A G C A T G C C G T A C T A G A C T G A C T G A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ATAACCAGGG
GTTAACTAGN-
 A C G T C G T A A C G T G C T A C G T A T A G C A T G C C G T A C T A G A C T G A C T G
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:ATAACCAGGG
--AACAAAGG
 C G T A A C G T G C T A C G T A T A G C A T G C C G T A C T A G A C T G A C T G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

PB0200.1_Zfp187_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATAACCAGGG---
NNAGGGACAAGGGCNC
 A C G T A C G T A C G T C G T A A C G T G C T A C G T A T A G C A T G C C G T A C T A G A C T G A C T G A C G T A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

PH0040.1_Hmbox1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATAACCAGGG---
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A C G T C G T A A C G T G C T A C G T A T A G C A T G C C G T A C T A G A C T G A C T G A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PB0158.1_Rfx3_2/Jaspar

Match Rank:6
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------ATAACCAGGG------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G C T A C G T A T A G C A T G C C G T A C T A G A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---ATAACCAGGG----
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T C G T A A C G T G C T A C G T A T A G C A T G C C G T A C T A G A C T G A C T G A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0119.1_Foxa2_2/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----ATAACCAGGG-
AAAAATAACAAACGG
 A C G T A C G T A C G T A C G T C G T A A C G T G C T A C G T A T A G C A T G C C G T A C T A G A C T G A C T G A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATAACCAGGG-
-GAACAATGGN
 C G T A A C G T G C T A C G T A T A G C A T G C C G T A C T A G A C T G A C T G A C G T
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---ATAACCAGGG----
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T C G T A A C G T G C T A C G T A T A G C A T G C C G T A C T A G A C T G A C T G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A