Information for 11-CCAGCTCAGT (Motif 29)

A G T C A T G C C G T A A C T G A G T C A C G T G A T C C G T A A C T G A C G T
Reverse Opposite:
G T C A A G T C A C G T C T A G C G T A T C A G A G T C A C G T A T C G A C T G
p-value:1e-7
log p-value:-1.770e+01
Information Content per bp:1.842
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.62%
Number of Background Sequences with motif54.8
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets62.1 +/- 26.7bp
Average Position of motif in Background50.2 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCAGCTCAGT
ATCAAGGTCA--
 A C G T A C G T A G T C A T G C C G T A A C T G A G T C A C G T G A T C C G T A A C T G A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCAGCTCAGT
TRAGGTCA--
 A G T C A T G C C G T A A C T G A G T C A C G T G A T C C G T A A C T G A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCAGCTCAGT
CAAAGGTCAG-
 A C G T A G T C A T G C C G T A A C T G A G T C A C G T G A T C C G T A A C T G A C G T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCTCAGT
TCAAGGTCAN-
 A C G T A G T C A T G C C G T A A C T G A G T C A C G T G A T C C G T A A C T G A C G T
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCAGCTCAGT
--AGGTCA--
 A G T C A T G C C G T A A C T G A G T C A C G T G A T C C G T A A C T G A C G T
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCAGCTCAGT
BTCAAGGTCA--
 A C G T A C G T A G T C A T G C C G T A A C T G A G T C A C G T G A T C C G T A A C T G A C G T
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCAGCTCAGT--
-CAGGTAAGTAT
 A G T C A T G C C G T A A C T G A G T C A C G T G A T C C G T A A C T G A C G T A C G T A C G T
A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

ZEB1/MA0103.2/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCAGCTCAGT
-CAGGTGAGG
 A G T C A T G C C G T A A C T G A G T C A C G T G A T C C G T A A C T G A C G T
A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCAGCTCAGT
-AAGGTCAC-
 A G T C A T G C C G T A A C T G A G T C A C G T G A T C C G T A A C T G A C G T
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCAGCTCAGT
TCAAGGTCATA
 A C G T A G T C A T G C C G T A A C T G A G T C A C G T G A T C C G T A A C T G A C G T
G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A