Information for 4-GAGAAGAATATWKTAG (Motif 6)

A T C G C T G A A C T G C G T A C G T A A C T G C T G A C G T A A C G T T C G A C G A T C G A T A C T G G A C T C G T A T A C G
Reverse Opposite:
A T G C C G A T C G T A T G A C G C T A C G T A A C G T G T C A A C G T A G C T A G T C A C G T A C G T A G T C A G C T A T G C
p-value:1e-12
log p-value:-2.942e+01
Information Content per bp:1.738
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif16.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.5 +/- 28.5bp
Average Position of motif in Background38.7 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0063.1_Sox13_1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAGAAGAATATWKTAG
TTAAGAACAATAAATT--
 A C G T A C G T A T C G C T G A A C T G C G T A C G T A A C T G C T G A C G T A A C G T T C G A C G A T C G A T A C T G G A C T C G T A T A C G
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAGAAGAATATWKTAG
-NGAAGC---------
 A T C G C T G A A C T G C G T A C G T A A C T G C T G A C G T A A C G T T C G A C G A T C G A T A C T G G A C T C G T A T A C G
A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GAGAAGAATATWKTAG
---AAGGATATNTN--
 A T C G C T G A A C T G C G T A C G T A A C T G C T G A C G T A A C G T T C G A C G A T C G A T A C T G G A C T C G T A T A C G
A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAGAAGAATATWKTAG
TTTAGAACAATAAAAT--
 A C G T A C G T A T C G C T G A A C T G C G T A C G T A A C T G C T G A C G T A A C G T T C G A C G A T C G A T A C T G G A C T C G T A T A C G
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T A C G T A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGAAGAATATWKTAG
TAGTGAACAATAGATTT-
 A C G T A C G T A T C G C T G A A C T G C G T A C G T A A C T G C T G A C G T A A C G T T C G A C G A T C G A T A C T G G A C T C G T A T A C G
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GAGAAGAATATWKTAG
TNNAGAACAATANATNN-
 A C G T A C G T A T C G C T G A A C T G C G T A C G T A A C T G C T G A C G T A A C G T T C G A C G A T C G A T A C T G G A C T C G T A T A C G
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GAGAAGAATATWKTAG
NTTNAGAACAATTA-----
 A C G T A C G T A C G T A T C G C T G A A C T G C G T A C G T A A C T G C T G A C G T A A C G T T C G A C G A T C G A T A C T G G A C T C G T A T A C G
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GAGAAGAATATWKTAG
NNNNNGAACAATTGANN--
 A C G T A C G T A C G T A T C G C T G A A C T G C G T A C G T A A C T G C T G A C G T A A C G T T C G A C G A T C G A T A C T G G A C T C G T A T A C G
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAGAAGAATATWKTAG
---ATGAATATTC---
 A T C G C T G A A C T G C G T A C G T A A C T G C T G A C G T A A C G T T C G A C G A T C G A T A C T G G A C T C G T A T A C G
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GAGAAGAATATWKTAG
NNTNANAACAATTNNA---
 A C G T A C G T A C G T A T C G C T G A A C T G C G T A C G T A A C T G C T G A C G T A A C G T T C G A C G A T C G A T A C T G G A C T C G T A T A C G
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A A C G T A C G T A C G T