Information for 25-RGGTGRAATGACA (Motif 50)

C T G A A C T G A C T G C G A T A C T G C T G A C G T A C G T A A C G T A C T G C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A G T C G T C A A C G T A C G T A G C T A G T C C G T A A G T C A G T C A G C T
p-value:1e-3
log p-value:-7.681e+00
Information Content per bp:1.885
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.2 +/- 28.3bp
Average Position of motif in Background72.6 +/- 1.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rxra/MA0512.2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RGGTGRAATGACA
GGGGTCAAAGGTCA
 A C G T C T G A A C T G A C T G C G A T A C T G C T G A C G T A C G T A A C G T A C T G C G T A A G T C C G T A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

Nr2f6/MA0677.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RGGTGRAATGACA
GAGGTCAAAGGTCA
 A C G T C T G A A C T G A C T G C G A T A C T G C T G A C G T A C G T A A C G T A C T G C G T A A G T C C G T A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

RXRB/MA0855.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RGGTGRAATGACA
GGGGTCAAAGGTCA
 A C G T C T G A A C T G A C T G C G A T A C T G C T G A C G T A C G T A A C G T A C T G C G T A A G T C C G T A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

RXRG/MA0856.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-RGGTGRAATGACA
GGGGTCAAAGGTCA
 A C G T C T G A A C T G A C T G C G A T A C T G C T G A C G T A C G T A A C G T A C T G C G T A A G T C C G T A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-RGGTGRAATGACA
GAGGTCAAAGGTCA
 A C G T C T G A A C T G A C T G C G A T A C T G C T G A C G T A C G T A A C G T A C T G C G T A A G T C C G T A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.63
Offset:7
Orientation:forward strand
Alignment:RGGTGRAATGACA-
-------TTGACAG
 C T G A A C T G A C T G C G A T A C T G C T G A C G T A C G T A A C G T A C T G C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RGGTGRAATGACA
TGGGGCAAAGGTCA
 A C G T C T G A A C T G A C T G C G A T A C T G C T G A C G T A C G T A A C G T A C T G C G T A A G T C C G T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RGGTGRAATGACA
TAGGGCAAAGGTCA
 A C G T C T G A A C T G A C T G C G A T A C T G C T G A C G T A C G T A A C G T A C T G C G T A A G T C C G T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RGGTGRAATGACA--
AAAGGTCAAAGGTCAAC
 A C G T A C G T C T G A A C T G A C T G C G A T A C T G C T G A C G T A C G T A A C G T A C T G C G T A A G T C C G T A A C G T A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C

NR2C2/MA0504.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RGGTGRAATGACA
AGGGGTCAGAGGTCA
 A C G T A C G T C T G A A C T G A C T G C G A T A C T G C T G A C G T A C G T A A C G T A C T G C G T A A G T C C G T A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A