Information for 17-SCAMDGGGCAGSAGGG (Motif 27)

T A G C A T G C T G C A T G A C C G A T A T C G C A T G A C T G G T A C G T C A A C T G T A C G C G T A A T C G A C T G C T A G
Reverse Opposite:
A G T C A G T C A T G C G C A T A T G C A G T C A C G T A C T G G T A C G A T C A T G C G C T A A C T G A C G T A T C G A T C G
p-value:1e-9
log p-value:-2.143e+01
Information Content per bp:1.611
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.29%
Number of Background Sequences with motif152.1
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets54.0 +/- 22.7bp
Average Position of motif in Background44.9 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:SCAMDGGGCAGSAGGG
-CAAAGGTCAG-----
 T A G C A T G C T G C A T G A C C G A T A T C G C A T G A C T G G T A C G T C A A C T G T A C G C G T A A T C G A C T G C T A G
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:2
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---SCAMDGGGCAGSAGGG
TCACCTCTGGGCAG-----
 A C G T A C G T A C G T T A G C A T G C T G C A T G A C C G A T A T C G C A T G A C T G G T A C G T C A A C T G T A C G C G T A A T C G A C T G C T A G
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:SCAMDGGGCAGSAGGG
--TNNGGGCAG-----
 T A G C A T G C T G C A T G A C C G A T A T C G C A T G A C T G G T A C G T C A A C T G T A C G C G T A A T C G A C T G C T A G
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:SCAMDGGGCAGSAGGG
-----GGGCGGGAAGG
 T A G C A T G C T G C A T G A C C G A T A T C G C A T G A C T G G T A C G T C A A C T G T A C G C G T A A T C G A C T G C T A G
A C G T A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----SCAMDGGGCAGSAGGG
TAGGGCAAAGGTCA------
 A C G T A C G T A C G T A C G T T A G C A T G C T G C A T G A C C G A T A T C G C A T G A C T G G T A C G T C A A C T G T A C G C G T A A T C G A C T G C T A G
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0202.1_Zfp410_2/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-SCAMDGGGCAGSAGGG
NNTNNGGGGCGGNGNGN
 A C G T T A G C A T G C T G C A T G A C C G A T A T C G C A T G A C T G G T A C G T C A A C T G T A C G C G T A A T C G A C T G C T A G
C G T A C T G A C A G T C G A T G C A T T A C G A C T G T A C G A C T G T G A C T C A G C T A G C T A G C T A G C A G T C T A G T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----SCAMDGGGCAGSAGGG
GTAGGGCAAAGGTCA------
 A C G T A C G T A C G T A C G T A C G T T A G C A T G C T G C A T G A C C G A T A T C G C A T G A C T G G T A C G T C A A C T G T A C G C G T A A T C G A C T G C T A G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:SCAMDGGGCAGSAGGG-
-----SDGCAGGTGCNS
 T A G C A T G C T G C A T G A C C G A T A T C G C A T G A C T G G T A C G T C A A C T G T A C G C G T A A T C G A C T G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:SCAMDGGGCAGSAGGG----
-----DCHCAGCAGGRGGCC
 T A G C A T G C T G C A T G A C C G A T A T C G C A T G A C T G G T A C G T C A A C T G T A C G C G T A A T C G A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

E2F4/MA0470.1/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:forward strand
Alignment:SCAMDGGGCAGSAGGG
-----GGGCGGGAAGG
 T A G C A T G C T G C A T G A C C G A T A T C G C A T G A C T G G T A C G T C A A C T G T A C G C G T A A T C G A C T G C T A G
A C G T A C G T A C G T A C G T A C G T A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G