Information for 1-CCTCCACCAGGTGGCA (Motif 2)

A T G C A G T C C A G T A G T C A G T C T G C A A G T C G T A C C G T A A C T G T A C G A C G T A C T G A T C G A G T C T G C A
Reverse Opposite:
A C G T A C T G A T G C A G T C C G T A A G T C A G T C C G A T A C T G C T A G A C G T C T A G C T A G G T C A T C A G T A C G
p-value:1e-15
log p-value:-3.597e+01
Information Content per bp:1.739
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif24.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets58.9 +/- 22.8bp
Average Position of motif in Background49.6 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CCTCCACCAGGTGGCA----
TGGCCACCAGGTGGCACTNT
 A T G C A G T C C A G T A G T C A G T C T G C A A G T C G T A C C G T A A C T G T A C G A C G T A C T G A T C G A G T C T G C A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:CCTCCACCAGGTGGCA------
--GCCASCAGGGGGCGCYVNNG
 A T G C A G T C C A G T A G T C A G T C T G C A A G T C G T A C C G T A A C T G T A C G A C G T A C T G A T C G A G T C T G C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CCTCCACCAGGTGGCA---
TGGCCACCAGGGGGCGCTA
 A T G C A G T C C A G T A G T C A G T C T G C A A G T C G T A C C G T A A C T G T A C G A C G T A C T G A T C G A G T C T G C A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CCTCCACCAGGTGGCA
-----AACAGATGGC-
 A T G C A G T C C A G T A G T C A G T C T G C A A G T C G T A C C G T A A C T G T A C G A C G T A C T G A T C G A G T C T G C A
A C G T A C G T A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CCTCCACCAGGTGGCA
-----NNCAGGTGNN-
 A T G C A G T C C A G T A G T C A G T C T G C A A G T C G T A C C G T A A C T G T A C G A C G T A C T G A T C G A G T C T G C A
A C G T A C G T A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T

FIGLA/MA0820.1/Jaspar

Match Rank:6
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CCTCCACCAGGTGGCA
-----AACAGGTGNT-
 A T G C A G T C C A G T A G T C A G T C T G C A A G T C G T A C C G T A A C T G T A C G A C G T A C T G A T C G A G T C T G C A
A C G T A C G T A C G T A C G T A C G T G C T A T G C A G T A C G C T A A T C G A T C G C A G T C T A G C A T G C G A T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:CCTCCACCAGGTGGCA-
--------GGTTGGCAT
 A T G C A G T C C A G T A G T C A G T C T G C A A G T C G T A C C G T A A C T G T A C G A C G T A C T G A T C G A G T C T G C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.61
Offset:8
Orientation:forward strand
Alignment:CCTCCACCAGGTGGCA
--------AGGTGTCA
 A T G C A G T C C A G T A G T C A G T C T G C A A G T C G T A C C G T A A C T G T A C G A C G T A C T G A T C G A G T C T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCTCCACCAGGTGGCA
---VNAVCAGCTGGC-
 A T G C A G T C C A G T A G T C A G T C T G C A A G T C G T A C C G T A A C T G T A C G A C G T A C T G A T C G A G T C T G C A
A C G T A C G T A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:10
Score:0.60
Offset:6
Orientation:forward strand
Alignment:CCTCCACCAGGTGGCA
------VCAGCTGBNN
 A T G C A G T C C A G T A G T C A G T C T G C A A G T C G T A C C G T A A C T G T A C G A C G T A C T G A T C G A G T C T G C A
A C G T A C G T A C G T A C G T A C G T A C G T T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C