Information for 3-AGGVTCBATBTAGTGT (Motif 5)

C G T A A T C G A C T G T A C G A G C T A G T C A C T G C G T A A G C T A C T G A C G T C T G A A C T G C G A T A T C G A G C T
Reverse Opposite:
C T G A A T G C C G T A A G T C A G C T T G C A T G A C T C G A A C G T T G A C T C A G C T G A A G T C A G T C A T G C C G A T
p-value:1e-10
log p-value:-2.480e+01
Information Content per bp:1.692
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets29.2 +/- 15.6bp
Average Position of motif in Background51.9 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:AGGVTCBATBTAGTGT--
--------TTGAGTGSTT
 C G T A A T C G A C T G T A C G A G C T A G T C A C T G C G T A A G C T A C T G A C G T C T G A A C T G C G A T A T C G A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.52
Offset:7
Orientation:forward strand
Alignment:AGGVTCBATBTAGTGT-
-------BTBRAGTGSN
 C G T A A T C G A C T G T A C G A G C T A G T C A C T G C G T A A G C T A C T G A C G T C T G A A C T G C G A T A T C G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

PB0139.1_Irf5_2/Jaspar

Match Rank:3
Score:0.51
Offset:4
Orientation:forward strand
Alignment:AGGVTCBATBTAGTGT---
----TTGACCGAGAATTCC
 C G T A A T C G A C T G T A C G A G C T A G T C A C T G C G T A A G C T A C T G A C G T C T G A A C T G C G A T A T C G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.51
Offset:8
Orientation:forward strand
Alignment:AGGVTCBATBTAGTGT--
--------TTRAGTGSYK
 C G T A A T C G A C T G T A C G A G C T A G T C A C T G C G T A A G C T A C T G A C G T C T G A A C T G C G A T A T C G A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:AGGVTCBATBTAGTGT-
-------CTYRAGTGSY
 C G T A A T C G A C T G T A C G A G C T A G T C A C T G C G T A A G C T A C T G A C G T C T G A A C T G C G A T A T C G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Vdr/MA0693.1/Jaspar

Match Rank:6
Score:0.47
Offset:1
Orientation:forward strand
Alignment:AGGVTCBATBTAGTGT-
-GAGTTCATTGAGTTCA
 C G T A A T C G A C T G T A C G A G C T A G T C A C T G C G T A A G C T A C T G A C G T C T G A A C T G C G A T A T C G A G C T A C G T
A C G T T C A G T C G A C A T G A C G T A C G T A G T C C T G A G A C T G A C T T C A G T C G A C T A G A C G T A C G T A G T C C T G A

PH0175.1_Vax2/Jaspar

Match Rank:7
Score:0.47
Offset:2
Orientation:reverse strand
Alignment:AGGVTCBATBTAGTGT--
--GNCTTAATTAGTGNNN
 C G T A A T C G A C T G T A C G A G C T A G T C A C T G C G T A A G C T A C T G A C G T C T G A A C T G C G A T A T C G A G C T A C G T A C G T
A C G T A C G T A C T G A G C T T G A C A G C T G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T T A C G A G T C G C T A T G A C

PH0033.1_Gbx1/Jaspar

Match Rank:8
Score:0.47
Offset:0
Orientation:forward strand
Alignment:AGGVTCBATBTAGTGT-
TGCCACTAATTAGTGTA
 C G T A A T C G A C T G T A C G A G C T A G T C A C T G C G T A A G C T A C T G A C G T C T G A A C T G C G A T A T C G A G C T A C G T
G C A T C T A G A T G C T G A C T C G A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A C G T A C T G A C G T G C T A

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.47
Offset:7
Orientation:reverse strand
Alignment:AGGVTCBATBTAGTGT
-------NTCAAGTGG
 C G T A A T C G A C T G T A C G A G C T A G T C A C T G C G T A A G C T A C T G A C G T C T G A A C T G C G A T A T C G A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:10
Score:0.46
Offset:1
Orientation:reverse strand
Alignment:AGGVTCBATBTAGTGT
-DGATCRATAN-----
 C G T A A T C G A C T G T A C G A G C T A G T C A C T G C G T A A G C T A C T G A C G T C T G A A C T G C G A T A T C G A G C T
A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C A C G T A C G T A C G T A C G T A C G T