Motif 19

Information for 5-CCCCCCCGCG (Motif 19)

Reverse Opposite:

p-value:	1e-6
log p-value:	-1.545e+01
Information Content per bp:	1.764
Number of Target Sequences with motif	15.0
Percentage of Target Sequences with motif	4.95%
Number of Background Sequences with motif	450.8
Percentage of Background Sequences with motif	0.91%
Average Position of motif in Targets	56.9 +/- 26.5bp
Average Position of motif in Background	49.7 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)	0.8
Multiplicity (# of sites on avg that occur together)	1.20
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

PB0103.1_Zic3_1/Jaspar

Match Rank:	1
Score:	0.79
Offset:	-1
Orientation:	reverse strand
Alignment:	-CCCCCCCGCG---- NCCCCCCCGGGGGGN

PB0102.1_Zic2_1/Jaspar

Match Rank:	2
Score:	0.79
Offset:	-1
Orientation:	reverse strand
Alignment:	-CCCCCCCGCG---- ACCCCCCCGGGGGGN

PB0101.1_Zic1_1/Jaspar

Match Rank:	3
Score:	0.78
Offset:	0
Orientation:	reverse strand
Alignment:	CCCCCCCGCG---- CCCCCCCGGGGGNN

PB0010.1_Egr1_1/Jaspar

Match Rank:	4
Score:	0.75
Offset:	-2
Orientation:	forward strand
Alignment:	--CCCCCCCGCG-- TCCGCCCCCGCATT

GLIS2/MA0736.1/Jaspar

Match Rank:	5
Score:	0.74
Offset:	-1
Orientation:	forward strand
Alignment:	-CCCCCCCGCG--- GACCCCCCGCGAAG

PB0204.1_Zfp740_2/Jaspar

Match Rank:	6
Score:	0.72
Offset:	-4
Orientation:	forward strand
Alignment:	----CCCCCCCGCG--- AAATTCCCCCCGGAAGT

ZNF740/MA0753.1/Jaspar

Match Rank:	7
Score:	0.71
Offset:	-1
Orientation:	forward strand
Alignment:	-CCCCCCCGCG CCCCCCCCAC-

EGR1/MA0162.2/Jaspar

Match Rank:	8
Score:	0.71
Offset:	-4
Orientation:	forward strand
Alignment:	----CCCCCCCGCG CCCCCGCCCCCGCC

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:	9
Score:	0.70
Offset:	1
Orientation:	reverse strand
Alignment:	CCCCCCCGCG--- -TCCCCTGGGGAC

EGR3/MA0732.1/Jaspar

Match Rank:	10
Score:	0.69
Offset:	-3
Orientation:	forward strand
Alignment:	---CCCCCCCGCG-- CTACGCCCACGCACT