Information for 5-TCCATATATC (Motif 33)

A C G T A G T C A G T C C G T A A C G T C G T A A C G T C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T C G T A A C G T C G T A C G A T A C T G A C T G C G T A
p-value:1e-6
log p-value:-1.573e+01
Information Content per bp:1.956
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.8 +/- 15.1bp
Average Position of motif in Background48.3 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TCCATATATC-----
ATGGGATATATCCGCCT
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T

SRF/MA0083.3/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TCCATATATC----
TGNCCATATATGGTCA
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCCATATATC-
GGCCATAAATCA
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

HLTF/MA0109.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCCATATATC
AACCTTATAT-
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C G T C G T A A C G T A G T C
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TCCATATATC-
GCCATAAATCA
 A C G T A G T C A G T C C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

PB0078.1_Srf_1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCCATATATC---
TTCCATATATGGAA
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A C G T A C G T
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A

Hoxc9/MA0485.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TCCATATATC--
GGCCATAAATCAC
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TCCATATATC---
-CCATATATGGNA
 A C G T A G T C A G T C C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T A C G T A C G T
A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

MF0008.1_MADS_class/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCCATATATC-
-CCATATATGG
 A C G T A G T C A G T C C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T
A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G

Gata1/MA0035.3/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCCATATATC-
TTCTTATCTGT
 A C G T A G T C A G T C C G T A A C G T C G T A A C G T C G T A A C G T A G T C A C G T
A G C T A G C T A G T C A G C T A C G T C G T A A C G T A G T C C G A T A T C G G A C T