Information for 3-TGTCCTTTTCTGAGAT (Motif 3)

C G A T A C T G C A G T A T G C A T G C C G A T A C G T C A G T A C G T A G T C A G C T C T A G C T G A C T A G C T G A A C G T
Reverse Opposite:
C G T A A G C T A G T C A G C T A G T C C T G A C T A G C G T A G C T A T C G A G C T A A T C G A T C G G C T A G T A C C G T A
p-value:1e-16
log p-value:-3.688e+01
Information Content per bp:1.767
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.3 +/- 24.7bp
Average Position of motif in Background79.7 +/- 10.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGTCCTTTTCTGAGAT-
TGACCTTTCGTGACCTT
 C G A T A C T G C A G T A T G C A T G C C G A T A C G T C A G T A C G T A G T C A G C T C T A G C T G A C T A G C T G A A C G T A C G T
A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TGTCCTTTTCTGAGAT
------GGTCTGGCAT
 C G A T A C T G C A G T A T G C A T G C C G A T A C G T C A G T A C G T A G T C A G C T C T A G C T G A C T A G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TGTCCTTTTCTGAGAT
--NCCTTATCTG----
 C G A T A C T G C A G T A T G C A T G C C G A T A C G T C A G T A C G T A G T C A G C T C T A G C T G A C T A G C T G A A C G T
A C G T A C G T A G C T A G T C A T G C A C G T A C G T C G T A A C G T A G T C C G A T A T C G A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGTCCTTTTCTGAGAT
TGACCTYA--------
 C G A T A C T G C A G T A T G C A T G C C G A T A C G T C A G T A C G T A G T C A G C T C T A G C T G A C T A G C T G A A C G T
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGTCCTTTTCTGAGAT
TGWCCTCARNTGACC-
 C G A T A C T G C A G T A T G C A T G C C G A T A C G T C A G T A C G T A G T C A G C T C T A G C T G A C T A G C T G A A C G T
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGTCCTTTTCTGAGAT
GGGGCTYGKCTGGGA-
 C G A T A C T G C A G T A T G C A T G C C G A T A C G T C A G T A C G T A G T C A G C T C T A G C T G A C T A G C T G A A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A A C G T

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TGTCCTTTTCTGAGAT
--NNCTTATCTN----
 C G A T A C T G C A G T A T G C A T G C C G A T A C G T C A G T A C G T A G T C A G C T C T A G C T G A C T A G C T G A A C G T
A C G T A C G T A G C T A G T C A T G C A G C T A C G T C G T A A C G T A G T C C G A T A T G C A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGTCCTTTTCTGAGAT
GTGACCTT---------
 A C G T C G A T A C T G C A G T A T G C A T G C C G A T A C G T C A G T A C G T A G T C A G C T C T A G C T G A C T A G C T G A A C G T
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TGTCCTTTTCTGAGAT
BNTGDCCTTG--------
 A C G T A C G T C G A T A C T G C A G T A T G C A T G C C G A T A C G T C A G T A C G T A G T C A G C T C T A G C T G A C T A G C T G A A C G T
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SRF/MA0083.3/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGTCCTTTTCTGAGAT
TGNCCATATATGGTCA
 C G A T A C T G C A G T A T G C A T G C C G A T A C G T C A G T A C G T A G T C A G C T C T A G C T G A C T A G C T G A A C G T
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A