Information for 12-CGTCTACTCT (Motif 33)

A G T C A C T G A C G T A G T C A C G T C G T A A G T C A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A C T G A C G T C G T A A C T G C G T A A G T C A C T G
p-value:1e-6
log p-value:-1.478e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 28.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CGTCTACTCT
VBSYGTCTGG---
 A C G T A C G T A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A C G T A G T C A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGTCTACTCT
CGTCTAGACA
 A G T C A C T G A C G T A G T C A C G T C G T A A G T C A C G T A G T C A C G T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

GLI2/MA0734.1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGTCTACTCT-
GCGACCACACTG
 A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A C G T A G T C A C G T A C G T
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CGTCTACTCT
CTGTCTGG---
 A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A C G T A G T C A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGTCTACTCT
--TCTTATCT
 A G T C A C T G A C G T A G T C A C G T C G T A A G T C A C G T A G T C A C G T
A C G T A C G T A G C T A G T C A C G T A C G T C G T A A C G T A G T C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CGTCTACTCT
TWGTCTGV---
 A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A C G T A G T C A C G T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CGTCTACTCT
TGTTTACTTT
 A G T C A C T G A C G T A G T C A C G T C G T A A G T C A C G T A G T C A C G T
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

PB0051.1_Osr2_1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CGTCTACTCT----
CNNNGCTACTGTANNN
 A C G T A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CGTCTACTCT
TGTTTACTTT
 A G T C A C T G A C G T A G T C A C G T C G T A A G T C A C G T A G T C A C G T
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CGTCTACTCT
CNTGTTTACATA
 A C G T A C G T A G T C A C T G A C G T A G T C A C G T C G T A A G T C A C G T A G T C A C G T
A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A