Information for 20-ACAAYGGYARTGA (Motif 28)

C G T A A G T C C G T A C T G A A G C T A C T G A C T G A G C T C G T A C T A G A C G T A C T G C G T A
Reverse Opposite:
C G A T A G T C C G T A A G T C A C G T T C G A A G T C A G T C C T G A A G C T A C G T A C T G A C G T
p-value:1e-7
log p-value:-1.774e+01
Information Content per bp:1.893
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.8 +/- 29.3bp
Average Position of motif in Background58.4 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX21/MA0866.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-ACAAYGGYARTGA-
AACAATGGTAGTGTT
 A C G T C G T A A G T C C G T A C T G A A G C T A C T G A C T G A G C T C G T A C T A G A C G T A C T G C G T A A C G T
C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-ACAAYGGYARTGA
AACAAAGG------
 A C G T C G T A A G T C C G T A C T G A A G C T A C T G A C T G A G C T C G T A C T A G A C G T A C T G C G T A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Sox1/MA0870.1/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-ACAAYGGYARTGA-
AACAATGNTATTGTT
 A C G T C G T A A G T C C G T A C T G A A G C T A C T G A C T G A G C T C G T A C T A G A C G T A C T G C G T A A C G T
T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---ACAAYGGYARTGA
VRAACAATGG------
 A C G T A C G T A C G T C G T A A G T C C G T A C T G A A G C T A C T G A C T G A G C T C G T A C T A G A C G T A C T G C G T A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-ACAAYGGYARTGA
RACAAWGG------
 A C G T C G T A A G T C C G T A C T G A A G C T A C T G A C T G A G C T C G T A C T A G A C G T A C T G C G T A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ACAAYGGYARTGA
RAACAATGGN-----
 A C G T A C G T C G T A A G T C C G T A C T G A A G C T A C T G A C T G A G C T C G T A C T A G A C G T A C T G C G T A
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ACAAYGGYARTGA
VRRACAAWGG------
 A C G T A C G T A C G T C G T A A G T C C G T A C T G A A G C T A C T G A C T G A G C T C G T A C T A G A C G T A C T G C G T A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ACAAYGGYARTGA
RNAACAATGG------
 A C G T A C G T A C G T C G T A A G T C C G T A C T G A A G C T A C T G A C T G A G C T C G T A C T A G A C G T A C T G C G T A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ACAAYGGYARTGA
GAACAATGGN-----
 A C G T A C G T C G T A A G T C C G T A C T G A A G C T A C T G A C T G A G C T C G T A C T A G A C G T A C T G C G T A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ACAAYGGYARTGA
AAAACAATGG------
 A C G T A C G T A C G T C G T A A G T C C G T A C T G A A G C T A C T G A C T G A G C T C G T A C T A G A C G T A C T G C G T A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T