Information for 6-CTGTACAGCA (Motif 24)

A G T C C G A T A C T G C A G T C G T A A G T C C G T A A C T G A G T C G T C A
Reverse Opposite:
A C G T A C T G A G T C A C G T A C T G C G A T G T C A A G T C C G T A A C T G
p-value:1e-9
log p-value:-2.276e+01
Information Content per bp:1.881
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.03%
Number of Background Sequences with motif81.1
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets46.1 +/- 23.2bp
Average Position of motif in Background51.6 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CTGTACAGCA----
TCNCTTTACAGCGNNNT
 A C G T A C G T A C G T A G T C C G A T A C T G C A G T C G T A A G T C C G T A A C T G A G T C G T C A A C G T A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

Rhox11/MA0629.1/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CTGTACAGCA----
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A G T C C G A T A C T G C A G T C G T A A G T C C G T A A C T G A G T C G T C A A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CTGTACAGCA----
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A G T C C G A T A C T G C A G T C G T A A G T C C G T A A C T G A G T C G T C A A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CTGTACAGCA
---CACAGN-
 A G T C C G A T A C T G C A G T C G T A A G T C C G T A A C T G A G T C G T C A
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.63
Offset:5
Orientation:forward strand
Alignment:CTGTACAGCA
-----CAGCC
 A G T C C G A T A C T G C A G T C G T A A G T C C G T A A C T G A G T C G T C A
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGTACAGCA-----
GAGCACAGCAGGACA
 A G T C C G A T A C T G C A G T C G T A A G T C C G T A A C T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTGTACAGCA-----
CCACACAGCAGGAGA
 A G T C C G A T A C T G C A G T C G T A A G T C C G T A A C T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTGTACAGCA----
---GTCAGCANNTN
 A G T C C G A T A C T G C A G T C G T A A G T C C G T A A C T G A G T C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTGTACAGCA
WDNCTGGGCA---
 A C G T A C G T A C G T A G T C C G A T A C T G C A G T C G T A A G T C C G T A A C T G A G T C G T C A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTGTACAGCA--
--DCTCAGCAGG
 A G T C C G A T A C T G C A G T C G T A A G T C C G T A A C T G A G T C G T C A A C G T A C G T
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G